Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151072g00006 ATGAACAACCCTTCCTCAAGTAGTGATTCTTTTCTAAGGAACATTCTAGAGAATCAAGATTTTGAGGTTGAAACTGACAGCAGCCACACCACCATGCAACAACCTCCTTCCGGCTACCGTGGCGATCGCCACAAGAAGAGGCCCTACCAGCGCCACACACCGCATCAGATACAAGAGATGGAAACGTTCTTCAAGATGTGCCCTCACCCAGATGAGCAGCAAAGGATAGAGCTTGGTAATGTTTTGGGGTTAGACCATTCACAAATCAAGTTTTGGTTCCAGAACAAGCGAACCCAACTCAAGCATCAATACGATCACAGCGAGAATATTGCACTGAAGAATGAGAATGAAGAGCTTCGCGCTGAGAACAAGAACTACAAGGAGTACCTAAGTAATATAATATGTCATAGCTGTGGAGGCCCACCTCCTCCTCCTCCATTGACCTACGACCAGATGATGCAAGAGAATAACCAGATAAGAGAAAAGATTGAGTGGGTGTCAACAATGATGTCTAATTGTGTTCTACAAGATCCAGATAATACTTCCGACCCTGACACCGACATGCCTCAGAATGAGCCTAATGTGGAATCATCTCAGCACAACAACACTGATAACATGGTGCCTCAGACTCAGGGTGTGTCTAATCAAGAACTTGGTAACATGGCATCACCACTTCAAGGCAATAGCATTGACATGCTACCTCCAAGTACGACTAATCAAGGCATTATTGACGACATACCATTGACTCAGCAGAACAATGACATTAACATGCCTCAGAATGTGATTAATCAAGGAATTGTTGATGACGTGCCATCATCTCAGGCTCAGAACAATGAGATTAACGTGACTCTGCCTCTGAGTATGTTGAATAAAGGAATTGGTATTAACATTGGCATTGTTCCACCTGGTGCTTTGCTTGATCAAGGAAATTGTAAGGTGCCATCATCATCATCACCTGAACAAAGCAACAAAATTAACATTAGCCTGCCTTTGGGTTCGCTTAATCAACATTTTGGAAGCTATAGAGCGAAGTCAAAAGGCAAAGCAAGGGAAACGAGTAGTGGTGGAGACCCTCTAATTAGGCCACTCCCCGTTTCTAACAAACCTATGATTGAAGAGCTTGCGGATGCATCAGTGGATGAACTCAGGGCCTTGGTTCAAGCAGGGAGGCCTCTGTGGGTCATTGGGGCTCACAACTCTGAGATGATCAACGAACAAGAATACTATAGGAGTTTCCCTGGCGGAATTGGTCCAAGACTCTTGGAGTATAAATCTGAATCTTCAAGGGAACCCAGGATCATCAACATGCATCATATTAACCTAATTGAGATCCTTAATGATGTGGATCTATGGTCATCTGTGTTTTGCGGAATTGTTGCAAAAGCAGCAACACTTCAAGTCCTATCAACTGGACAAGCAGGAAGTTATGATGGAATCTTGCAAGTGGTGTCAGCAGAGTTCCAAGTGCCAATACCATTTGTTCCGGCTCGTGAGTACTATTTCCTAAGGTACTGCAAGAAGCTCCAAGATGAGTCATGGGTGGTGGTGGATGCTTCCTTGGAAACTTCACAACCAAATGCAACAATCCCTCCAACCCGAAGAAGGCCTTCTGGTTGCCTGATTCAACCATCCCCAGATGGTTACTCAGCAAAGGTTACCTGGGTCGAACATGTAGAAGTGGATAACAGAACATTAACAGTGAATACTATGTATAAGCCTCTAGTTGAATCTGGCTTTGCCTTTGGGGCTAGACGCTGGATGGCAGAATTAGATAGACGATGCGAACGTATATCTACTACACTACAAGCCACCACCATATTACAACCACAAGACCAACTTAGTGTGACGAGTGAGCAAGGCAGAAAGGGGCTGGTGAAACTGGCAGAGAGATTGGTTATGGACTTTTTAAGTGGTGTTGGTGCTTCAACAGCAGAAGATTGGACAACACTAACTCCATCAACAAGTCAAAGCAATACAAGGATCATAACCAGAAAGGTTAAGGACGATCCAGGTAGGCCTTCCGGTATAGTAGTCGGTGCCGCAACTTGCTTCCGCCTCCTAGTTCCTCCAAACACCCTCTTTGATTGGATTCAAACCGCAGACTCAAGAGCAGAGTGGGATGTTCTCTGCACCGGAGGTGAAGCTGAGGAATTTGCACGCATAAGAACTGGTTGCGACGCTGGCAACTGTATCACCTTACTCCGTATCAAGAGTTTAGATGCGAAGAACAACGGCATGATCATAGTTCAAGAGAGTAGCAGCGATTCAACGGGGTCATTCGTGATATACGCACCGGTAGATGTGAATTCGTTAAATCTAGTGATTGAAGGGAGAGATCCAGATGAACTTCCGATTTTGCCCTCGGGAATGGCGATTCTTCCAGATGGATGTAGAAGTGGAAGTTGTTTGGTGACACTGTCATTCCAGATATTGATTGAGTCTGATCCGAACAAGAAGATACCGATCCGTTCGCTGAGAACCGTTAACCAATTGGTTAAGGCAACAGTTGACAACATCAAAGCTCTTCTTGAGACTAGGGAGTAA 2544 0.4489 MNNPSSSSDSFLRNILENQDFEVETDSSHTTMQQPPSGYRGDRHKKRPYQRHTPHQIQEMETFFKMCPHPDEQQRIELGNVLGLDHSQIKFWFQNKRTQLKHQYDHSENIALKNENEELRAENKNYKEYLSNIICHSCGGPPPPPPLTYDQMMQENNQIREKIEWVSTMMSNCVLQDPDNTSDPDTDMPQNEPNVESSQHNNTDNMVPQTQGVSNQELGNMASPLQGNSIDMLPPSTTNQGIIDDIPLTQQNNDINMPQNVINQGIVDDVPSSQAQNNEINVTLPLSMLNKGIGINIGIVPPGALLDQGNCKVPSSSSPEQSNKINISLPLGSLNQHFGSYRAKSKGKARETSSGGDPLIRPLPVSNKPMIEELADASVDELRALVQAGRPLWVIGAHNSEMINEQEYYRSFPGGIGPRLLEYKSESSREPRIINMHHINLIEILNDVDLWSSVFCGIVAKAATLQVLSTGQAGSYDGILQVVSAEFQVPIPFVPAREYYFLRYCKKLQDESWVVVDASLETSQPNATIPPTRRRPSGCLIQPSPDGYSAKVTWVEHVEVDNRTLTVNTMYKPLVESGFAFGARRWMAELDRRCERISTTLQATTILQPQDQLSVTSEQGRKGLVKLAERLVMDFLSGVGASTAEDWTTLTPSTSQSNTRIITRKVKDDPGRPSGIVVGAATCFRLLVPPNTLFDWIQTADSRAEWDVLCTGGEAEEFARIRTGCDAGNCITLLRIKSLDAKNNGMIIVQESSSDSTGSFVIYAPVDVNSLNLVIEGRDPDELPILPSGMAILPDGCRSGSCLVTLSFQILIESDPNKKIPIRSLRTVNQLVKATVDNIKALLETRE 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151072g00006 847 CDD homeodomain 46 103 IPR001356 GO:0003677
Stsc151072g00006 847 MobiDBLite consensus disorder prediction 1 15 - -
Stsc151072g00006 847 Gene3D - 436 577 IPR023393 -
Stsc151072g00006 847 Coils Coil 109 132 - -
Stsc151072g00006 847 CDD START_ArGLABRA2_like 368 595 - -
Stsc151072g00006 847 Pfam Homeodomain 46 101 IPR001356 GO:0003677
Stsc151072g00006 847 SMART START_1 373 596 IPR002913 GO:0008289
Stsc151072g00006 847 SUPERFAMILY Bet v1-like 368 597 - -
Stsc151072g00006 847 FunFam Homeobox-leucine zipper protein HDG1 33 119 - -
Stsc151072g00006 847 ProSiteProfiles START domain profile. 364 599 IPR002913 GO:0008289
Stsc151072g00006 847 SUPERFAMILY Bet v1-like 620 831 - -
Stsc151072g00006 847 MobiDBLite consensus disorder prediction 174 211 - -
Stsc151072g00006 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 44 843 IPR042160 -
Stsc151072g00006 847 Pfam START domain 374 596 IPR002913 GO:0008289
Stsc151072g00006 847 MobiDBLite consensus disorder prediction 1 48 - -
Stsc151072g00006 847 SMART HOX_1 45 107 IPR001356 GO:0003677
Stsc151072g00006 847 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Stsc151072g00006 847 SUPERFAMILY Homeodomain-like 29 102 IPR009057 -
Stsc151072g00006 847 Gene3D - 32 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151072g00006 Stsc-Chr151072 25486 29062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151072g00006 325 843 Homeobox Transcription Factor Family AT4G04890 49.538 2.25e-178 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151072g00006 START 2.6e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151072g00006 K09338 - pvy:116122149 529.25