Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151070g00006 ATGAGGTTATCATACAGTCCAGCTGCTCAGTTTTTCCTTTTTCTGGTTCAATGGACCGATTGTCACCTCGCCGGAGCGTTGGGATTGCTTAGAATCCTTATTTACAAGGCATGTGCTGATGGTAAGACAACTATTTCCATTTACGAACGAAAAGCCAGCCTAAAGGAGTTCTACCGTGTGCTGTTTCCCTCTTTATTGCAACTCAATGGAGGAATCAGCGATGTCGAAGACAGGAAACAGAAACATCTGTGTGCTACAAAGTACAAGACAAGAGACATGACAAGCAAGGGAAAGGTCTCTGAAATCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAACGGCACGGTTGTGTTGCCGAATTGCAATCATTCGATGTGTATGAAATGCTACGAAGATTGGTGGGCAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGTCTTGAAGGAGTAAAGTCTGGTGACCTTTGGATCTACATAAACAAGAGTGAAATTGATGATTTGGATTCAATCAACAAAGAGAATTTGAAGAGATTATTTATGTACGTAGAAAGATTGCCCATCGTTGTGCCGGACCACCCTATATCCGTTTCATACCATCAACGCTGGTGA 621 0.4267 MRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEIEIEREEECGICLEMNGTVVLPNCNHSMCMKCYEDWWARSQSCPFCRESLEGVKSGDLWIYINKSEIDDLDSINKENLKRLFMYVERLPIVVPDHPISVSYHQRW 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151070g00006 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 157 IPR013083 -
Stsc151070g00006 206 SUPERFAMILY RING/U-box 99 151 - -
Stsc151070g00006 206 PANTHER RING FINGER PROTEIN 41, 151 1 202 - -
Stsc151070g00006 206 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Stsc151070g00006 206 ProSiteProfiles Zinc finger RING-type profile. 110 148 IPR001841 -
Stsc151070g00006 206 SMART ring_2 110 147 IPR001841 -
Stsc151070g00006 206 FunFam RING/U-box superfamily protein 91 157 - -
Stsc151070g00006 206 Pfam Zinc finger, C3HC4 type (RING finger) 107 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151070g00006 Stsc-Chr151070 46900 49274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151070g00006 54 159 C3H Transcription Factor Family AT5G01960 31.532 5.79e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151070g00006 K25840 - gmx:100819267 320.857