Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151070g00005 ATGGGGTTTAGTTTCAAGAGAAGGAAGAAGGAACAACAAGATGGAGGTGGAGGAGATAATAATATCACCAAGTCTTTCAAGGATTCACTTAAAGCTCTTCAAGCTGACATCCAATTTGCCAATACACTAGCTTCAGAGTATCCATGTGAGCGCGATGGTTCTCGCTTCCAAATGAGGTTATCATACAGTCCAGCTGCTCAGTTTTTCCTTTTTCTGGTTCAATGGACCGATTGTCACCTCGCCGGAGCGTTGGGATTGCTTAGAATCCTTATTTACAAGGCATGTGCTGATGGTAAGACAACTATTTCCATTTACGAACGAAAAGCCAGCCTAAAGGAGTTCTACCGTGTGCTGTTTCCCTCTTTATTGCAACTCAATGGAGGAATCAGCGATGTCGAAGACAGGAAACAGAAACATCTGTGTGCTACAAAGTACAAGACAAGAGACATGACAAGCAAGGGAAAGGTCTCTGAAATCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAACGGCACGGTTGTGTTGCCGAATTGCAATCATTCGATGTGTATGAAATGCTACGAAGATTGGTGGGCAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGTCTTGAAGGAGTAAAGTCTGGTGACCTTTGGATCTACATAAACAAGAGTGAAATTGATGATTTGGATTCAATCAACAAAGAGAATTTGAAGAGATTATTTATGTACGTAGAAAGATTGCCCATCGTTGTGCCGGACCACCCTATATCCGTTTCATACCATCAACGCTGGTGA 792 0.4255 MGFSFKRRKKEQQDGGGGDNNITKSFKDSLKALQADIQFANTLASEYPCERDGSRFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEIEIEREEECGICLEMNGTVVLPNCNHSMCMKCYEDWWARSQSCPFCRESLEGVKSGDLWIYINKSEIDDLDSINKENLKRLFMYVERLPIVVPDHPISVSYHQRW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151070g00005 263 MobiDBLite consensus disorder prediction 1 15 - -
Stsc151070g00005 263 FunFam RING/U-box superfamily protein 148 214 - -
Stsc151070g00005 263 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151070g00005 263 SUPERFAMILY RING/U-box 156 208 - -
Stsc151070g00005 263 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
Stsc151070g00005 263 PANTHER RING FINGER PROTEIN 41, 151 24 259 - -
Stsc151070g00005 263 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Stsc151070g00005 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 214 IPR013083 -
Stsc151070g00005 263 SMART ring_2 167 204 IPR001841 -
Stsc151070g00005 263 Pfam Zinc finger, C3HC4 type (RING finger) 164 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151070g00005 Stsc-Chr151070 45723 49274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151070g00005 111 216 C3H Transcription Factor Family AT5G01960 31.532 4.91e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151070g00005 K25840 - gmx:100814293 380.563