Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151070g00003 ATGGCAGGGCAAGAGGTTGTTTTAAATGGGAATAATAATAATGGCTCATTGAACTTGAAGCCAAGTAGTGATGACACCAGAGGGAAGAACATACAATGCAAAGCTGCGGTGGCTTATGGTCCTGGAGAAGCGTTTGTGTTGGAACAAGTTATTGTTCATCCTCCTCAGAAGATGGAGGTTCGGATCAAGATTCTATACACTTCCATATGTCATACGGATCTAGGATCTTGGAAAGCTGAGAATGAAGCTCAGCGTGCTTTTCCAAGGATTTTTGGCCATGAAGCTTCCGGGGTTGTGGAAAGTGTGGGAGAAGGAGTAAGAGAGGTGAAAGAAGGGGACATAGTGGTACCAATATTTAATGGAGAATGTGGAGAATGCTGCTACTGCAAGAGTTCAGTAACAAACATGTGTGAGAGGTTTGGTGTGAACCCAATGAAGAAGGTTATGGATAGTGATGGCAAAACCAGGTTCACAACTCTTCAAGGCAAACCCATTTACCATTTCTTGAACACCTCCACTTTTTCTGAGTACACCGTCGTTGACTCTGCTTGTGTGGTCAACATTCCACCTCAACTTGCTTCCAGTCTCAAACAACTTACCTTGATCAGCTGCGGTGTCTCCACCGGAGTTGGAGCTGCTTGGAACAGTGCAAATGTGAATGCTGGTTCCACTGTAGCCGTTTTTGGATTAGGTGCTGTGGGGCTTGCTGTTGCAGAAGGGGCACGAGCTAGAGGTGCATCAAAAATAATAGGTGTGGATATCAATCCAGACAAATTCATCAAAGCCCAAGCTATGGGAATTACAGATTTCATAAATCCAAGTGATGAAGAGAAACCAGTGAATGAGGAAATGACTGGAGGAGGTGTAGACTACAGTTTTGAATGTGCTGGCAACTTGGATGTTCTAAGGGAAGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTACTAGGAATTCACACATCACCAAAATTGCTTCCAATTCACCCAATGGAGCTCTTTGATGGTCGGAGAATCATAGGATCAGTCTTTGGAGGCTTCAAAGGGAAAACCCAGTTGCCTCATTTTGCCAATGAATGCATACATGGAGTGGTGAATCTAGACAAGTTCATCACACACGAGCTTCCATTTGAGGAGATTAACAAAGCCTTTGATCTTCTGATTGCTGGGAAATCACTGAGATGTGTTCTACACCTCTAA 1206 0.442 MAGQEVVLNGNNNNGSLNLKPSSDDTRGKNIQCKAAVAYGPGEAFVLEQVIVHPPQKMEVRIKILYTSICHTDLGSWKAENEAQRAFPRIFGHEASGVVESVGEGVREVKEGDIVVPIFNGECGECCYCKSSVTNMCERFGVNPMKKVMDSDGKTRFTTLQGKPIYHFLNTSTFSEYTVVDSACVVNIPPQLASSLKQLTLISCGVSTGVGAAWNSANVNAGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAQAMGITDFINPSDEEKPVNEEMTGGGVDYSFECAGNLDVLREAFLSAHEGWGLTVVLGIHTSPKLLPIHPMELFDGRRIIGSVFGGFKGKTQLPHFANECIHGVVNLDKFITHELPFEEINKAFDLLIAGKSLRCVLHL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151070g00003 401 PANTHER ALCOHOL DEHYDROGENASE 28 399 - -
Stsc151070g00003 401 FunFam Alcohol dehydrogenase 6 36 221 - -
Stsc151070g00003 401 Gene3D - 36 396 - -
Stsc151070g00003 401 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 92 106 IPR002328 GO:0008270|GO:0016491
Stsc151070g00003 401 Gene3D - 209 344 - -
Stsc151070g00003 401 FunFam S-(hydroxymethyl)glutathione dehydrogenase 209 344 - -
Stsc151070g00003 401 SUPERFAMILY GroES-like 26 218 IPR011032 -
Stsc151070g00003 401 SUPERFAMILY GroES-like 351 400 IPR011032 -
Stsc151070g00003 401 Pfam Alcohol dehydrogenase GroES-like domain 59 186 IPR013154 -
Stsc151070g00003 401 Pfam Zinc-binding dehydrogenase 232 349 IPR013149 -
Stsc151070g00003 401 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 196 363 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151070g00003 Stsc-Chr151070 20580 30078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151070g00003 59 390 Monolignol Biosynthesis Gene Families AT2G21890 28.487 1.19e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151070g00003 K00001 - gmx:100787307 580.867