Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151070g00001 ATGGGGTCTCACCAACAAGAGCCATGGCTTTTGGAGGACGGCAACTTGAAGGTGCTCACCAAGGAGATGAGGCACGGCCACGGCCGCAGTGGCCGCACCGCCCACAACATGTCTTCCTCTTCCCTCAGGAAGAAATCCACCCGGACCCTCGTGTCGAAGGTCCGGTGCGGATTGCTAAGGAACGTGTTGTCCAACTTCCAAGAGGTTATTCTGGGGACAAAGTTGTCCATCTTGTTCCCAGCAATTCCCATTGCCATCATTGCCCATTGCTATGGCCTTGGAAGACCATGGGTTTTTGCATTGAGCTTACTTGGGCTTACGCCACTTGCTGAACGTGTCAGCTTTCTAACAGAACAAGTCGCATTTTACACTGGTCCTACAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATATTACTGAGCTGGTAATAGCAATATTTGCACTGAGTACTAACAAAGTTGATGTTGTCAAGTATTCTCTGTTGGGCTCTATCCTCTCAAACCTTCTATTAGTTCTTGGAACCTCTCTATTGTGTGGTGGCATTGCAAACCTTGGAAAGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTAATGCTTCTGCTGGCATTGTTGTGCCACTTGCTTCCAATGCTCTTCAGATACAGCGGCGGCTCGGACGCTCTCGCGGCCGCAAACTCGTCGCTGTACTTGTCGAGGGCTGCCAGCATTACCATGTTGATTGCATATTTTGCTTACCTCATCTTTCAGTTGTGGACACACAGGCAATTGTTTGAAGCTGAAGATGAGGATGGAGATGGTGAGAATAATGGCTCAGATGAAGAAGAAGCTGTGATTGGGATCTGGAGTGGTGTTGCATGGCTGGTTGGGATGACTGTTTTCATTGCTTTGTTATCTGAATATGTTGTGGACACAATTGAGGAAGCATCAGATACATGGGGCCTTTCTGTAAGCTTTCTCAGCATAATTTTGCTACCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATCTCATTGGGTGTTGCATTAGGTTCTGCCACTCAAATTGGCATGTTTGCGGTTCCTTTATGTGTGCTGGTTGCTTGGATAATGGGTGTTAAAATGGATCTAAACTTCAACCTGCTAGAAACAGGTTCTCTTGCTTTGGCAATAATAGCCACATCCTTTACTTTACAGGATGGTACATCTCACTATATGAAAGGGCTTATTCTTCTCTTGTGCTACGTTGTGATTGGTGCTTGCTTCTTTGTGCAAAGAACACCCTTAAACCAAGGGAATAATGTCACTAACATCACATTCAAATCAGCAAGTGATGCAGTTTTAAGTGCTTAA 1374 0.4534 MGSHQQEPWLLEDGNLKVLTKEMRHGHGRSGRTAHNMSSSSLRKKSTRTLVSKVRCGLLRNVLSNFQEVILGTKLSILFPAIPIAIIAHCYGLGRPWVFALSLLGLTPLAERVSFLTEQVAFYTGPTVGGLLNATCGNITELVIAIFALSTNKVDVVKYSLLGSILSNLLLVLGTSLLCGGIANLGKEQKYDRRQADVNSLMLLLALLCHLLPMLFRYSGGSDALAAANSSLYLSRAASITMLIAYFAYLIFQLWTHRQLFEAEDEDGDGENNGSDEEEAVIGIWSGVAWLVGMTVFIALLSEYVVDTIEEASDTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFAVPLCVLVAWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGTSHYMKGLILLLCYVVIGACFFVQRTPLNQGNNVTNITFKSASDAVLSA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151070g00001 457 FunFam Vacuolar cation/proton exchanger 126 271 - -
Stsc151070g00001 457 Gene3D - 277 430 IPR044880 -
Stsc151070g00001 457 Gene3D - 126 276 IPR044880 -
Stsc151070g00001 457 Pfam Sodium/calcium exchanger protein 97 255 IPR004837 GO:0016020|GO:0055085
Stsc151070g00001 457 Pfam Sodium/calcium exchanger protein 288 425 IPR004837 GO:0016020|GO:0055085
Stsc151070g00001 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 435 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc151070g00001 457 NCBIfam calcium/proton exchanger 80 430 IPR004798 GO:0006816|GO:0015369
Stsc151070g00001 457 FunFam Vacuolar cation/proton exchanger 275 431 - -
Stsc151070g00001 457 NCBIfam calcium/proton exchanger 61 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151070g00001 Stsc-Chr151070 9996 14153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151070g00001 7 438 Antiporters AT2G38170 68.506 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151070g00001 K07300 - gmx:100779440 672.544