Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151069g00018 | ATGGACTCCGTCGACGACATCCTCCGCCTCTTATCGGACCAACGCCGCGAGCTCGCCGCCGCAGAGGCCCTCGACTCCGACCTCGAATTCGCATACCGCCTACAACTTGAGGAAGCACTCGCCGCCTCCCTCGCTTCCCTCCCCTCCTCTTCCTCCCCTCAACCACCACCACCAACACTTCCAACTCACGATGACAAAAACGACGCCGTTTTGAACGCCACGACGCTCCAGGCGCAAGAACTCGCTAGGGTTCAGCAAGAACTCCAGGACCACCACCTCAGCGAGGCGGAGGCCCGCAAAACTAGACTCGATCTCAACCGTCGCGTCCATGATCAGAAAGTCGCCATCGAAATCCACAGAATCCCCGAAGACGATTGGGTCGAATGGGGCGATAATTTTGAGAAGCCCTTCTTCGGTGAAGGTTCTTCTTCTTCGAACGGTAAGGGCAATTTGGGAATTGACGACGACGATGACGAGGAGGAAGATGAAGACGATGAAGATGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAATGACGAGAAGCGGAAGAACGGAGAGAGGGTTGTGTTGGCTGGGATTGGGGTTGCTATTTGTGACCCTAAAGATAACTTGATTCTTGAAATTCGAAAGCCACTCGTTGGGTGTGGAAGGAGCAAGATTGTTGCTGATCTTAAGGCTTCCATTGAAGGATTGAATGCTGCGTTATTTTTGGACTTGAAGCGTGTTCACTTCTTCTGCGATTACTATCCAATGTTCCAATTCGTTAGGGGAAAATGGCCTGTGAAACAGCGGAAGGTTGCTGTGCTAGTCAATCAAGTGAATCAGCTACGCAGAAAATTTACTTATTGTGCTCCAATGCTTCTGGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGATGCAATCGATTCTCAATTGACAGCGCCTGCGGACTCTAGCAGTGTGAGGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGACGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACACCAGTATTGCTTTTCTTGCATGAGGCAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTCAAGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAATCTATTGTCCTTATCCACGATGCTCTGCATTGATGTCAAAAACCGAGCTTTTTGAATACTCCAAAAATCTTATTGGTGATTCTGAACAATCAGGACCCAAGAAATGTTTAAAATGCCATGGTCTATTCTGTTTCAATTGCAAGGTCCCTTGGCATAGTGGCATGAAATGCTATGATTACAAAAGGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTGAAGTTTCTGGCATCACGGAGTCTATGGCGCCAGTGTGTGAAATGTAACCATATGATTGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGCTACGAATTCTGCTATAACTGTGGAGCCGAATGGAAGAACAAGAAAGCAACGTGTTCTTGCCCACTTTGGGCTGAAGACAACATTTGGTATGAGGATCATGGGAGGGACTCGGATGAAGAAGACGAAGAAGAAGATGATGAAGATGAATTTTATGATTCTGATTATTCAGATGAATTTTACTAA | 1731 | 0.4616 | MDSVDDILRLLSDQRRELAAAEALDSDLEFAYRLQLEEALAASLASLPSSSSPQPPPPTLPTHDDKNDAVLNATTLQAQELARVQQELQDHHLSEAEARKTRLDLNRRVHDQKVAIEIHRIPEDDWVEWGDNFEKPFFGEGSSSSNGKGNLGIDDDDDEEEDEDDEDAVFRVYFKGLVSNDEKRKNGERVVLAGIGVAICDPKDNLILEIRKPLVGCGRSKIVADLKASIEGLNAALFLDLKRVHFFCDYYPMFQFVRGKWPVKQRKVAVLVNQVNQLRRKFTYCAPMLLARHDVKYAFKLARDAIDSQLTAPADSSSVRNLNETCVICLEDTDGNNFFSVDGCQHQYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKIYCPYPRCSALMSKTELFEYSKNLIGDSEQSGPKKCLKCHGLFCFNCKVPWHSGMKCYDYKRLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWYEDHGRDSDEEDEEEDDEDEFYDSDYSDEFY | 576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151069g00018 | 576 | Pfam | Reverse transcriptase-like | 192 | 305 | IPR002156 | GO:0003676|GO:0004523 | |
| Stsc151069g00018 | 576 | FunFam | RBR-type E3 ubiquitin transferase | 321 | 406 | - | - | |
| Stsc151069g00018 | 576 | CDD | BRcat_RBR_unk | 406 | 469 | - | - | |
| Stsc151069g00018 | 576 | MobiDBLite | consensus disorder prediction | 45 | 66 | - | - | |
| Stsc151069g00018 | 576 | Gene3D | - | 170 | 314 | IPR036397 | GO:0003676 | |
| Stsc151069g00018 | 576 | Gene3D | - | 464 | 574 | - | - | |
| Stsc151069g00018 | 576 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 406 | IPR013083 | - | |
| Stsc151069g00018 | 576 | Coils | Coil | 4 | 24 | - | - | |
| Stsc151069g00018 | 576 | CDD | Rcat_RBR_unk | 492 | 527 | - | - | |
| Stsc151069g00018 | 576 | SUPERFAMILY | RING/U-box | 324 | 405 | - | - | |
| Stsc151069g00018 | 576 | ProSiteProfiles | Zinc finger RING-type profile. | 326 | 370 | IPR001841 | - | |
| Stsc151069g00018 | 576 | Pfam | IBR domain, a half RING-finger domain | 408 | 466 | IPR002867 | GO:0008270 | |
| Stsc151069g00018 | 576 | Pfam | IBR domain, a half RING-finger domain | 485 | 534 | IPR002867 | GO:0008270 | |
| Stsc151069g00018 | 576 | SUPERFAMILY | RING/U-box | 480 | 543 | - | - | |
| Stsc151069g00018 | 576 | FunFam | RBR-type E3 ubiquitin transferase | 170 | 309 | - | - | |
| Stsc151069g00018 | 576 | MobiDBLite | consensus disorder prediction | 547 | 576 | - | - | |
| Stsc151069g00018 | 576 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 187 | 543 | IPR031127 | GO:0004842|GO:0016567 | |
| Stsc151069g00018 | 576 | FunFam | RBR-type E3 ubiquitin transferase | 464 | 575 | - | - | |
| Stsc151069g00018 | 576 | MobiDBLite | consensus disorder prediction | 551 | 576 | - | - | |
| Stsc151069g00018 | 576 | ProSitePatterns | Zinc finger RING-type signature. | 344 | 353 | IPR017907 | - | |
| Stsc151069g00018 | 576 | SMART | ibrneu5 | 479 | 536 | IPR002867 | GO:0008270 | |
| Stsc151069g00018 | 576 | SMART | ibrneu5 | 393 | 466 | IPR002867 | GO:0008270 | |
| Stsc151069g00018 | 576 | MobiDBLite | consensus disorder prediction | 137 | 162 | - | - | |
| Stsc151069g00018 | 576 | ProSiteProfiles | TRIAD supradomain profile. | 322 | 546 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151069g00018 | Stsc-Chr151069 | 145788 | 149067 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151069g00018 | 169 | 525 | C3H Transcription Factor Family | AT2G19610 | 33.978 | 4.51e-60 | 203 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151069g00018 | - | - | ahf:112736554 | 964.526 |