Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151069g00006 ATGTTCGATCTTAATCTAAATGCGGATTGCGACGATTCGACTCAGAACGGTGACTCGGCAGTGGTGATGTTGTGCGAGAAGCTTCCAGAAGGTTCCTTGAACCAAATGACGGAGTCGGCCGGGACATCGAACTCCTCCGTCGTCAATGCTGACGGTTCGAGCAACAACGACGACTCGTCGTGCTCCACGCGCGTCGCCGACAACGCGCTCACTCTCAATTTCGGAATCCTGAAAGCGGAGGCAGCATCGAACGATAACGGCGTCGTGACGAAAGAGCTGTTTCCGGTGAACGGAGGAGCGAACCTCGTTGATTCCGTGAACTGGCAGAAGAGTACGTTTCAAGGAACGAACGGCTCGATTGACCTCTCGTTCAATCGGCAGGGAGTGGTGGACGGTGAGGTCAAGGTGGTTCAGGTTCAACAACCGGCGAAGAAGAGTAGAAGAGGACCAAGGTCTCGTAGCTCGCAGTACAGAGGCGTTACCTTCTATAGAAGAACAGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTGGGCGGATTCGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGAAGCTGATATCAATTTCAATCTGAGTGATTACGAGGACGATCTTAAACAGACCAAGAATCTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAGTACCGAGGAGTGACCCTCCACAAGTGTGGCCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGCACTTATGAAGGAGAGATGAAACCTCCAGCCATCAACGAAGGTGGCAGTCCTAATCTTGAACTTAATTTGGGCATAGCAGCTCCAGGACATGGTCCTAAAGAAAACAGAGGGCAACTCCAGTTCCCCTTCGTCCCTTACAGCATGCATGCTGGAAGAACAATGGTATAG 1044 0.5048 MFDLNLNADCDDSTQNGDSAVVMLCEKLPEGSLNQMTESAGTSNSSVVNADGSSNNDDSSCSTRVADNALTLNFGILKAEAASNDNGVVTKELFPVNGGANLVDSVNWQKSTFQGTNGSIDLSFNRQGVVDGEVKVVQVQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKPPAINEGGSPNLELNLGIAAPGHGPKENRGQLQFPFVPYSMHAGRTMV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151069g00006 347 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 318 - -
Stsc151069g00006 347 SMART rav1_2 248 296 IPR001471 GO:0003700|GO:0006355
Stsc151069g00006 347 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Stsc151069g00006 347 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Stsc151069g00006 347 MobiDBLite consensus disorder prediction 34 61 - -
Stsc151069g00006 347 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Stsc151069g00006 347 SUPERFAMILY DNA-binding domain 247 291 IPR016177 GO:0003677
Stsc151069g00006 347 CDD AP2 156 214 IPR001471 GO:0003700|GO:0006355
Stsc151069g00006 347 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Stsc151069g00006 347 Gene3D AP2/ERF domain 247 291 IPR036955 GO:0003700|GO:0006355
Stsc151069g00006 347 FunFam AP2-like ethylene-responsive transcription factor 155 214 - -
Stsc151069g00006 347 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Stsc151069g00006 347 CDD AP2 247 292 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151069g00006 Stsc-Chr151069 44303 48464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151069g00006 1 271 AP2-EREBP Transcription Factor Family AT2G28550 64.085 1.19e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151069g00006 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151069g00006 K09284 - gmx:100788303 457.218