Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151067g00039 ATGGCATCAGCGGGTATAGCACCTGCTTCTGGAGTAAAAGATATGAACGGAAGTTCAGTTGCTGTTGAAAGGTTACCTGATGAGATGAATGACATGAAGATCAGGGATGACAGGGAGATGGAAACTGCTGTGGTTGATGGTAATGGGACTGAAACGGGACACATAATTGTCACTACCATTGGCGGTAAAAATGGTCAGCCCAAGCAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGGCATGGGTCTTTTGGTGTGGTTTTCCAGGCAAAGTGCTTGGAGACTGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAGGACAAGAGATACAAGAACCGGGAGTTGCAGACCATGCGCCTTCTCGACCACCCTAACGTCGTGTCTTTGAAGCATTGCTTCTTCTCAACAACTGAGAAAGATGAACTCTATCTTAACTTGGTACTCGAGTATGTTCCCGAAACCGTCAATAGGGTGATCAGACACTACAACAAAATGAATCAAAGGATGCCGTTGATATATGTCAAACTATATTCTTATCAGATATTTAGAGCACTTGCTTATCTTCACAACAGCATTGGAGTATGTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCATACCCACCAGCTGAAGATATGTGACTTTGGAAGTGCTAAAATTTTGGTAAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTACAGAGCTCCTGAGCTCATATTTGGGGCAACTGAGTACACCACTGCCATTGACATCTGGTCAGGTGGTTGTGTACTTGGCGAACTATTACTTGGCCAGCCTCTCTTTCCGGGTGAAAGTGGAGTAGACCAGCTTGTGGAAATTATCAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAATTTAAATTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGGATGCCACCCGAAGCTGTGGATCTTGTTGCAAGACTACTGCAGTACTCTCCAAATCTTCGGAGCACAGCTTTGGAGGCTCTTGTCCATCCATTCTTTGATGAACTGCGTGATCCGAATACCCGCCTACCAAATGGACGCTTTCTTCCTCCACTATTTAACTTCAAACCCAGTGAGCTCAAGGGAGTACCTGTGGAGATGCTGGTGAAGCTGATTCCACCTCATGCAAGAAAGCAGTGTGCCTTCTTTGGTTCATAA 1230 0.4407 MASAGIAPASGVKDMNGSSVAVERLPDEMNDMKIRDDREMETAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKMNQRMPLIYVKLYSYQIFRALAYLHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKILVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSGGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVARLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKPSELKGVPVEMLVKLIPPHARKQCAFFGS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151067g00039 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 403 - -
Stsc151067g00039 409 MobiDBLite consensus disorder prediction 1 26 - -
Stsc151067g00039 409 CDD STKc_GSK3 68 360 IPR039192 -
Stsc151067g00039 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc151067g00039 409 FunFam Shaggy-related protein kinase kappa 153 401 - -
Stsc151067g00039 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Stsc151067g00039 409 SUPERFAMILY Protein kinase-like (PK-like) 72 384 IPR011009 -
Stsc151067g00039 409 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Stsc151067g00039 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151067g00039 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Stsc151067g00039 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151067g00039 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Stsc151067g00039 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151067g00039 Stsc-Chr151067 199854 203201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151067g00039 79 364 MAP Kinase Gene Family AT3G45640 34.576 5.39e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc151067g00039 Pkinase 2.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151067g00039 K27413 - gmx:100788046 780.785