Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151067g00029 ATGGAAGCTAAGAAGAATAAGGTAGTGAAGAAAACAGGATCACAGTGTATAGAAGAAGAAAAGGAAAGATTAGCCCCGAAAGGAAAGAGTTGGAGTAGAGAAGAAGAAGAGAATGATATAATAAGGAAAGGACCATGGAGCGTTGAAGAAGACATGATTCTGAGCAATTACGTGGCCACCCATGGTCATGGTCGCTGGAACTCCCTCGCTCGCTCTGCAGGGCTGAAGAGGTCCGGCAAAAGTTGCAGGTTGAGATGGCTAAACTATCTTCGTCCTGATGTTCGCCGTGGAAACATCACGCTCCAGGAACAGATCACCATTCTTGATCTTCATTCACGCTGGGGCAATAGGTGGTCAAAAATTGCAGAGCAGTTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGGACGAGAGTGAGTAAGCAGGCAAAGCAACTCAACTGTGATGTCAATAGCAAAAAATTCAGGGACACTTTGCATTACGTTTGGATGCCCCTCTTGCGAGAGCGACTTCAGTCGCCCTCGCAAATGGAGCATCCAAACCCAACTCCCATCTTCTCCTCGGACTCATCATCATCATCACAACAAGTGGTGCATAGTAGTGTTGTTGAAGATGAGCCGGGAATATGGCCGAGTATGAATAACGAAGAAATGTTTGAATATACCAACATACCCTTGGGGCTGGGGGAAGATGCTATTGGTAGTGGGGACTTGATGCTGGAGAGTTTGTGCAACAACAACCATGACAACATATATGGCTTCTTCTATCACGACTTTGATGTCATGACCTTGGAATAA 804 0.4565 MEAKKNKVVKKTGSQCIEEEKERLAPKGKSWSREEEENDIIRKGPWSVEEDMILSNYVATHGHGRWNSLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVSKQAKQLNCDVNSKKFRDTLHYVWMPLLRERLQSPSQMEHPNPTPIFSSDSSSSSQQVVHSSVVEDEPGIWPSMNNEEMFEYTNIPLGLGEDAIGSGDLMLESLCNNNHDNIYGFFYHDFDVMTLE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151067g00029 267 SMART sant 42 92 IPR001005 -
Stsc151067g00029 267 SMART sant 95 143 IPR001005 -
Stsc151067g00029 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Stsc151067g00029 267 CDD SANT 100 139 IPR001005 -
Stsc151067g00029 267 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Stsc151067g00029 267 FunFam MYB transcription factor 100 163 - -
Stsc151067g00029 267 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Stsc151067g00029 267 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Stsc151067g00029 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Stsc151067g00029 267 FunFam Myb transcription factor 43 95 - -
Stsc151067g00029 267 MobiDBLite consensus disorder prediction 1 36 - -
Stsc151067g00029 267 Gene3D - 98 161 - -
Stsc151067g00029 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 39 197 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc151067g00029 267 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Stsc151067g00029 267 Gene3D - 43 95 - -
Stsc151067g00029 267 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Stsc151067g00029 267 CDD SANT 45 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151067g00029 Stsc-Chr151067 155423 156502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151067g00029 41 180 MYB Transcription Factor Family AT1G48000 71.429 3.86e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151067g00029 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151067g00029 K09422 - gmx:778065 268.47