Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151067g00019 ATGGTGAATTTCAGCGGAGACCCTCACAGTTACGCTCAACCTCAAACCCAAGACAACAACCACTTCAACCACCCTAACACCAACTACAACTGCCACAACGCCGTCAATGCCTTCCCCAACCCCAACCCAAACCCAATCGATTCTCCTGCTTCTGGCTATGCTCCTCCTAACCATTCACGTCCACCCCGCAAGCGACCCTGGACTTCCCCAGATCAAGCAGATAACGGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAAAACAGCTACCGAGGCTGATGTCCGCCTTGTGTTTGAAGGGCATGGGACTATTGTTGAGGTCGTTCTTTTAAGAGATAAGAGAACTGGTGGACGACAAGGAAGTTGTTTTGTGAAATATGCCACATTAGATGAAGCTGAGAGAGCCATTAAGGCTTTAAGCAGTAAGTATACATTTCCTGGGGAATCATCTCCTGTTGTTGTCAGATATGCTGATCGGGAACGTGAACGGCTTGGGTATTGTATAATGAAGGTAAAACTCAAGAGAGGTGAGAGTAGTTCTCTCTCCTTGTCTCTGGGTATTGAACTTCTTACTTTGTGTATGTGCACTGACCCCTTGATTAAGGCGAGTTGTGAAGCTGCAGTTGAACCTTGGCAGTAA 639 0.4664 MVNFSGDPHSYAQPQTQDNNHFNHPNTNYNCHNAVNAFPNPNPNPIDSPASGYAPPNHSRPPRKRPWTSPDQADNGHVKVYVAPVPKTATEADVRLVFEGHGTIVEVVLLRDKRTGGRQGSCFVKYATLDEAERAIKALSSKYTFPGESSPVVVRYADRERERLGYCIMKVKLKRGESSSLSLSLGIELLTLCMCTDPLIKASCEAAVEPWQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151067g00019 212 PANTHER RNA BINDING PROTEIN 27 172 - -
Stsc151067g00019 212 SMART rrm1_1 79 155 IPR000504 GO:0003723
Stsc151067g00019 212 MobiDBLite consensus disorder prediction 1 75 - -
Stsc151067g00019 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 159 IPR000504 GO:0003723
Stsc151067g00019 212 MobiDBLite consensus disorder prediction 42 63 - -
Stsc151067g00019 212 MobiDBLite consensus disorder prediction 1 41 - -
Stsc151067g00019 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 145 IPR000504 GO:0003723
Stsc151067g00019 212 Gene3D - 68 164 IPR012677 -
Stsc151067g00019 212 SUPERFAMILY RNA-binding domain, RBD 53 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151067g00019 Stsc-Chr151067 96626 98402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151067g00019 78 163 Eukaryotic Initiation Factors Gene Family AT2G23350 30.233 9.47e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151067g00019 - K13207 gmx:100776162 162.54