Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151067g00009 ATGGAAATTTTGCAGAAGTTTAAAGCTGGTATATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTCGATATCAAGTCAATTAAGTCTGTGGTAAACTTTGACATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGGAGAACAGGGCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGCGAACTGGTTAATAGCTTGATTGCTGCTGGTCAGAATGTATCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGGTTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGGAGAGGCGGCGGCGGGCGGGGTGTGCGTGGAGTTGATTTTGGCCTTGGTATTGGATATAATCCCGAGTCCAACAATGCTTCATCTAACACAACTCCAAGCCGCTCAGCCGCTGTAAATTCTCTTCGAACAGGAATGATGTCACAGTTTCGGAGTAGCTTTGTTGCTGCCTCCTCGAACTCCCAAAGTCAAGGATACAATAACAATACAAGTATCGCTGCAAATAAGAGACCTGCACTTCGTGGTTTTGTATCTGGTGGATCAATTGGTGGGGATATAAATTCTCATAATAATGCTGCTTCACCCAGTCCTGCAACATCAGCAGTAAACTCCACTGGTCAAAATTCTGGTGTAAACCCTGCTCAGAACAATTCAAACAGCTCTAAACCTAGAGAAAGGAGGAGGGCATCAGGCTGGGATAGGTAG 777 0.453 MEILQKFKAGIYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGRGVRGVDFGLGIGYNPESNNASSNTTPSRSAAVNSLRTGMMSQFRSSFVAASSNSQSQGYNNNTSIAANKRPALRGFVSGGSIGGDINSHNNAASPSPATSAVNSTGQNSGVNPAQNNSNSSKPRERRRASGWDR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151067g00009 258 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 96 - -
Stsc151067g00009 258 Gene3D - 1 100 IPR027417 -
Stsc151067g00009 258 SMART helicmild6 1 56 IPR001650 -
Stsc151067g00009 258 MobiDBLite consensus disorder prediction 211 244 - -
Stsc151067g00009 258 MobiDBLite consensus disorder prediction 107 121 - -
Stsc151067g00009 258 Pfam Helicase conserved C-terminal domain 2 56 IPR001650 -
Stsc151067g00009 258 MobiDBLite consensus disorder prediction 211 258 - -
Stsc151067g00009 258 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 96 IPR001650 -
Stsc151067g00009 258 CDD SF2_C_DEAD 2 66 - -
Stsc151067g00009 258 MobiDBLite consensus disorder prediction 103 126 - -
Stsc151067g00009 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 101 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151067g00009 Stsc-Chr151067 44466 46189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151067g00009 3 77 Eukaryotic Initiation Factors Gene Family AT1G72730 40.000 1.51e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151067g00009 K12835 - gmx:100814854 399.438