Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00026 ATGGACTATCGTTGGACCAATGGGAAACAGGACACTGGCAGTGGCCGAGACAGGAGACAACATAAAAGGGACCAGGCATATCAGGACAAACTTGTTGAGAATTCGTTGGAGGATTTTTGTTTGCCGATCAACCACAGGCCAACTGAGAATGTTGACCTGGAAAATGTTGAACAAGCATCCCTTGACACACAGTTAACGTCATCTAATATTGGCTTCAAGCTTCTCCAAAAGATGGGTTGGAAAGGAAAAGGTCTTGGGAAGGATGAGCAAGGAATCATTGAGCCAATAAAGTCGGGGATGAGAGATCCAAGACTTGGAGTTGGTAAACAAGAAGAGGATGATTTTTTCACCGCAGAAGAAAATATCCAGCGAAGAAAACTAGATATTGAGTTGGAGGAGACAGAAGAAAATGTGAGAAAGCGGGAGGTGCTAGCAGAACGTGAACAAAAAATTCAAACCGAAGTGAAAGAAATCCGAAAGGTGTTTTACTGTGAACTCTGCAACAAGCAATACAAATTGGCAATGGAATTCGAAGCACACTTGAGTTCTTACGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGCCGAGACGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAAAGAGATGGCTAAGTTTGCCCAAATGGCTGATGCACAAAAGCAACAACGGCTTCAACTGCAACAAGAGTCTGGATCTGGATCTGCGTCTGCGTCAGTTTTGTCTGAATCAAGAACTGCTACTGCACTTACAGATCAAGAGCAGCGGAACACATTGAAGTTTGGGTTTTCTTCTAAAGGCACTGCTTCCAAGGTTTCGGTTGGCATCAAGAAGCCAAATATTGCAAAGAAACAAAATGTTCCCATTTCATCGGTTTTTGGCAATGATTCTGATGAAGAATAG 930 0.428 MDYRWTNGKQDTGSGRDRRQHKRDQAYQDKLVENSLEDFCLPINHRPTENVDLENVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGVGKQEEDDFFTAEENIQRRKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEKEMAKFAQMADAQKQQRLQLQQESGSGSASASVLSESRTATALTDQEQRNTLKFGFSSKGTASKVSVGIKKPNIAKKQNVPISSVFGNDSDEE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00026 309 SMART G-patch_5 65 110 IPR000467 GO:0003676
Stsc151066g00026 309 MobiDBLite consensus disorder prediction 228 280 - -
Stsc151066g00026 309 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Stsc151066g00026 309 Coils Coil 219 239 - -
Stsc151066g00026 309 MobiDBLite consensus disorder prediction 1 24 - -
Stsc151066g00026 309 ProSiteProfiles G-patch domain profile. 67 112 IPR000467 GO:0003676
Stsc151066g00026 309 Pfam G-patch domain 68 108 IPR000467 GO:0003676
Stsc151066g00026 309 SUPERFAMILY beta-beta-alpha zinc fingers 143 197 IPR036236 -
Stsc151066g00026 309 MobiDBLite consensus disorder prediction 193 309 - -
Stsc151066g00026 309 MobiDBLite consensus disorder prediction 193 223 - -
Stsc151066g00026 309 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 309 - -
Stsc151066g00026 309 Coils Coil 117 144 - -
Stsc151066g00026 309 Pfam Zinc-finger double-stranded RNA-binding 162 189 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00026 Stsc-Chr151066 161694 164831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00026 13 309 C2H2 Transcription Factor Family AT5G26610 64.000 5.33e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00026 - - gmx:100793206 491.886