Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00025 ATGATGCCTCTGCATGAGTTGTACCGTAAGGCCAAAGACAAGATTGATTATTCTAAAGAGATCAATAGCACAAGTGCACCTCATCATTCAACCGTACCTGATAATGATTTCTATGAGCTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCAAGTAGAGGTAGAAAGAGTCCAACTTGTAAGACTTTGCCATCTCAATCTCATTGTCCCAAGGTTCTTCAAGATAGGGATGTAGTGGGATATGGTAATGGTAATATGATGAAGATGGGGAAGTTTGTGGATTCAGAAACTGGACTGAATGAGATTAGAATGCAGACCCCATCAGCTGAAGTTGGTCTAAGCCAAGATGAAGATGTCATACATTGGTTGAATTATGGAATAGATGAATCTTTGCCACATGACTATGGTTCTGATTTCATACATGAACTCTCAGGGGTCACCATGAATGACATCCCTCCCTTAAATAACTTATCTTTATTGGACAAAAGAAGCAATTGCAATCAGGTATTTAACAAGGACTTTTCGGTCATGGCTAGAGGAGAGATTCAGATCCCTGGAACCAAAGCTAGCACAAGTCAATTTTGCCAACCATCATCATATCAATGTCAAGGATCATTTGCATCTGTTAGGTCCAGAGCATCAGAGATAACTGAGAATAATGGAAGTAACCCTGCTCATCAAGTTCCTTCTGGGGAAATCCCTCAGATTTTCCCATCTGTCTCAACTGGTTTTTCTGGGTTGAAGTTGGATAAGCAAGATCAGATTATGTGCAGCAGTAGTTCGACTATAATGAATTTCTCCCATTTCGCTAGACCTGCTGCTATTGTGAAAGCTAATCTTCATAACATTGGGTTGTGTTCATCAGCATCAGATGGTATTGAAAACAAGACTAAAGGTGCTGCTGCAACCACAAGCAATCCTCCTGAATCAACAAAAGCTGGTTCTAGTGGCGAGCGTCCGAAAGAATCAGGCATGAAGGAGCAGAAGGTTATGGAGCCATCTAAGGCTGATTTGAAGCAGTTGGAGCCTAAATCTCTAGAAGGGAATGCTGCTGTTTTGAGGCAACCTGATCCTGCTCGAAAAGAAGATGCATCAAAGATTTATCAAAGTTCCAATCTACTTCTTTGTGAAAGTACCAATAAAGGAGAGGAAGCTGTTGTTAAAAATATGGAGCCTGCAGTAGCCTCTTCATCTGTTTGCTCCGGTAATGGCGTAGAGAGAATTTCAGACAAGCCAAATCAAAATTTGAAGAGAAAAAGACAAGACACTGAGGACTCTGAGTGCCACAGTGAGGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGGTCCAACACGAGGTGTTAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGAGCATTACAGGAGCTCATACCAAACTGCAATAAGGTTGACAAAGCTTCAATGCTGGATGAGGCAATCGAGTATCTCAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTGTATATGTCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATCCACAGATGGCTTCCTTTTCTCCAATTGGAGTTGGCATGCAGATGGGATTGGGAATGGGTTATGGAATGGGCATGCCTGACATGAACAGTGGATCTTCTAGATTCCCAATGGTGCAGGTGCCCCAAATGCAAGGAACTCATGTGCCTGGACCCTCAGCATTACAGGGGATGGCAAGATCAAATCCTCAAGTGTTTGGGGTGCCTGGCCAGGGCCTTCCAATTCCATCAATGCCACGTGCTCCTCCCATGTATTCTTATCCTTTAGAGCCTCTTGCAAACTCATCAACCTTACAACCAAGTCCAAATGCCAATGGAACAGCAGGACTCATGGAAACTGTGAATCCAGCTTCAGCATCAAACCAAAAGGATCCAATAATGCCAAATGTGAACTCACAAATTGTGCACAACACCAACGGTTGTAACTCGACGAGTCAGACTGCGAAACAGTGTGAAGCAGCAGCAGCAGGTGGCAGGATTGAACCCTCTTCAGCTTTGGTACACAATAGTGGTGGTGCCTCTCAGGCTAATGACGGCGCAGCGGTGGATGCCATGAAAAAAGATAGCCTTGCGACTGATAAATCCAAGTAG 2184 0.4364 MMPLHELYRKAKDKIDYSKEINSTSAPHHSTVPDNDFYELVWENGQISMQGQSSRGRKSPTCKTLPSQSHCPKVLQDRDVVGYGNGNMMKMGKFVDSETGLNEIRMQTPSAEVGLSQDEDVIHWLNYGIDESLPHDYGSDFIHELSGVTMNDIPPLNNLSLLDKRSNCNQVFNKDFSVMARGEIQIPGTKASTSQFCQPSSYQCQGSFASVRSRASEITENNGSNPAHQVPSGEIPQIFPSVSTGFSGLKLDKQDQIMCSSSSTIMNFSHFARPAAIVKANLHNIGLCSSASDGIENKTKGAAATTSNPPESTKAGSSGERPKESGMKEQKVMEPSKADLKQLEPKSLEGNAAVLRQPDPARKEDASKIYQSSNLLLCESTNKGEEAVVKNMEPAVASSSVCSGNGVERISDKPNQNLKRKRQDTEDSECHSEDVEEESVGVKKAGPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMSPMMLPAGMQHMHPQMASFSPIGVGMQMGLGMGYGMGMPDMNSGSSRFPMVQVPQMQGTHVPGPSALQGMARSNPQVFGVPGQGLPIPSMPRAPPMYSYPLEPLANSSTLQPSPNANGTAGLMETVNPASASNQKDPIMPNVNSQIVHNTNGCNSTSQTAKQCEAAAAGGRIEPSSALVHNSGGASQANDGAAVDAMKKDSLATDKSK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00025 727 CDD bHLH_AtPIF_like 455 517 IPR047265 -
Stsc151066g00025 727 SMART finulus 461 510 IPR011598 GO:0046983
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 413 443 - -
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 398 468 - -
Stsc151066g00025 727 Pfam Helix-loop-helix DNA-binding domain 459 505 IPR011598 GO:0046983
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 299 315 - -
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 317 344 - -
Stsc151066g00025 727 FunFam Basic helix-loop-helix transcription factor 450 513 - -
Stsc151066g00025 727 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 454 515 IPR036638 GO:0046983
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 299 366 - -
Stsc151066g00025 727 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 455 504 IPR011598 GO:0046983
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 49 69 - -
Stsc151066g00025 727 PANTHER TRANSCRIPTION FACTOR PIF3 2 678 IPR044273 GO:0003700|GO:0006355
Stsc151066g00025 727 Gene3D - 451 513 IPR036638 GO:0046983
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 693 727 - -
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 451 468 - -
Stsc151066g00025 727 MobiDBLite consensus disorder prediction 398 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00025 Stsc-Chr151066 132980 136231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00025 2 576 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.201 5.61e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151066g00025 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00025 K12126 - gmx:100794974 744.191