Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00020 ATGTCGTCATCGAGGCCAAGCCAATCATCAAGCAATTCAAGCAGATCAAGACACAGTGCAAGAGTAATTGCTCAGACAACTGTCGATGCAAAGCTCCATGCAAACTTTGAGGAGTCCGGTAGCTCCTTCGATTACTCCAATTCGGTTCGGTTGTCTTCTGGTACAGCCAGTGCAGAGAATCAGCCAAGGACTGACAGAGTTACAACTGCTTATCTTCATCAAATGCAGAAGGGGAAGTTCATCCAGCCCTTTGGCTGCTTGCTAGCTTTGGATGAGAAGACATTCAGGGTTGTTGCATACAGTCAGAATGCACCTGAAATGCTTACCATGGTTAGCCATGCTGTTCCAAGTGTTGGTGATCATCCAGCTCTTGGCATTGGCACTGACATTAGAACTATTTTCACATCCTCAAGTGCTGCTGCTCTTCAGAAGGCCCTTGGAGTTCCGGAGGTTTCGCTTCTTAACCCAATTCTAGTTCATTGCAAGACTTCTGGGAAGCCCTTCTATGCAATTGTTCATCGTGTTACCGGGACTTTGATCATTGATTTTGAGCCTGTTAAGCCTCATGAAGTTCCCATGACTGCGGCAGGTGCGCTGCAATCTTACAAGCTTGCGGCGAAAGCAATAACTAGATTGCAGTCTTTGCCCAGTGGTAGCATGGAAACGCTTTGTGACACGATGGTTCAAGAAGTTTTCGAGCTCACGGGTTATGACAGGGTCATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTCATTGCTGAGGTTGCAAAGCCAGGCCTTGAGCCATATCTGGGTTTGCACTATCCAGCCACTGATATTCCCCAGGCTGCACGTTTTCTGTTTATGAAAAACAAGGTCCGCATGATCGTTGATTGTCGTACAAAGCATGTGAAGGTGCTTCAGGACCCAAAAGTTTCCATTGATTTAACTTTGTGCGGTTCAACTTTAAGGGCAGCTCATAGTTGCCATTTGCAGTATATGGAAAATATGAATTCAATTGCTTCCCTAGTTATGGCAGTTGTGGTCAATGATAATGATGAAGATGGGGATGGCTCTGATGTTGTTCAGCCACAAAAGAGGAAGAGACTCTGGGGTCTAGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTTTTGGCTCAAGTATTTGCCATCCATGTGAATAAGGAATTAGAGTTAGAATATCAGATTGTTGAGAAGAACATCCTGCGCACACAGACACTCTTGTGTGATATGTTGCTGCGAGATGCACCCCTTGGTATTGTATCACAGAGTCCTAATATAATGGATCTTGTGAGATGTGACGGAGCAGCACTCTTGTATAGAGACAAGGTATGGAGATTAGGTGTGGCACCAAGTGAATCTCATATAAGAGAGTTAGCTTTATGGCTCTCTAAGTGCCATAAGGACTCCACCGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGTCTGCTGCTCTCGGTGATGCTGTTTGTGGAATGGCAGCTGTGAGAATTTCTTCCGTGGACATAGTTTTCTGGTTTAGAACACACACTGCAGCGGAAATCAGGTGGGGCGGTGCAAAGCATGAACCTGGTGAAAGGGATGATCCTACGAAGATGAGTCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGGAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCGTTGCAGCTAATACTGAGAAATTCATTCAAAGACAATGAGATTATGGATATAAGTACGCAAGCTATTGATACAAGACTAAATGATTTGAAGATTGAAGGGATGCAGGAACTAGAAGTGGTGACGAGTGAGATGGTTCGATTAATTGAAACCGCATCAGTGCCAATTTTGGCAGTTAATGTTGATGGGATGGTCAATGGATGGAACACGAAGATTGCTGAGTTGACAGGCCTTTCAGTTGAGGAAGCTATTGGAAAGGATTTACTATTGCTGGTTGAGGATTTTTCAGTAGAGAGAGTCAAGAAGATGCTGGACATGGCACTGCAGGGTCAAGAAGAGAAGAATTTCCAATTTGAGATCAAGACGCATGGTGAGAAGATTGATTCAGGTCCTATCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGAATGTCCAAAATAACGTGGTGGGAGTTTGTTTTGTGGCCCATGATATAACTGCCGAGAAGACAGTCATGGACAAATTCACTCGAATTGAAGGTGACTATAGGGCCATTGTACAGAACCCAAACCCATTGATCCCCCCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAATGGAATCCAGCCATGACAAAGTTAACTGGATGGAAAAGAGAGGATGTGATGGATAAAATGTTATTAGGGGAAGTTTTCGGAACCCATATAGCTTGTTGCCGTCTTAAGAATCAAGAAGCTGTTGTTAATTTCGGAATTGTACTTAACAATGCCATGACTGGTGTAGAAACAGAGAAGGCTCCGTTTGGTTTCTTCACTCGGAAGGGAAAGTATGTAGAATGCCTGCTATCTGTGAGCAAGAAATTGGATGTAGATGGTGAAGTTACTGGAGTCTTCTGCTTCTTACAGACAGCTAGCCCAGAGCTTCAACAAAATACTGAGTTGGGAATTGAGCAAAAACAACTTCTGCACACTGGCACTCAGTGCCAACGCCAGCTTAGCAAAATTCTCGATGACTCGGATCTCGACAGTATCATTGATGGCTACTTGGATTTGGAAATGGTTGAATTCACAATGCATCAAGTTTTTGTTGCTTGCCTAAGTCAAGTCATGACAAAGAGTAACGCAATGGGTATCCACATAATCAACGAAGTTGCAGAGCACATCATGACAGAAACCTTATTTGGTGATAGTCTTAGGCTTCAGCAAGTCTTGGCTGACTTCTTGTTGATTTCCATCAATTTTACGCCAACCGGAGGTCAAGTTGTTATTGCAGCTTCTTTAACCAAAGATCAGTTAGGAAAATCAGTTCATTTGGCTAACTTGGAGATAAGCATAACACATGATGGTGTTGGTGTTCCGGAAACGCTACTGAACCAAATGTTCGGACGGGACGGACAAGAATCCGAGGAGGGTATTAGTCTGCTCATCAGCAGAAAGTTGCTGAAGCTGATGAATGGAGACGTGCGATATCTGAGGGAAGCTGGTAAATCATCTTTCATCTTAACAGTTGAACTGGCTGCAGCCCAAAAATTGATTGCTTGA 3255 0.439 MSSSRPSQSSSNSSRSRHSARVIAQTTVDAKLHANFEESGSSFDYSNSVRLSSGTASAENQPRTDRVTTAYLHQMQKGKFIQPFGCLLALDEKTFRVVAYSQNAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTSSSAAALQKALGVPEVSLLNPILVHCKTSGKPFYAIVHRVTGTLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMETLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRTKHVKVLQDPKVSIDLTLCGSTLRAAHSCHLQYMENMNSIASLVMAVVVNDNDEDGDGSDVVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLLRDAPLGIVSQSPNIMDLVRCDGAALLYRDKVWRLGVAPSESHIRELALWLSKCHKDSTGLSTDSLSDAGFPGSAALGDAVCGMAAVRISSVDIVFWFRTHTAAEIRWGGAKHEPGERDDPTKMSPRSSFKAFLEVVKGRSLPWKDYEMDAIHSLQLILRNSFKDNEIMDISTQAIDTRLNDLKIEGMQELEVVTSEMVRLIETASVPILAVNVDGMVNGWNTKIAELTGLSVEEAIGKDLLLLVEDFSVERVKKMLDMALQGQEEKNFQFEIKTHGEKIDSGPISLVVNACASRNVQNNVVGVCFVAHDITAEKTVMDKFTRIEGDYRAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREDVMDKMLLGEVFGTHIACCRLKNQEAVVNFGIVLNNAMTGVETEKAPFGFFTRKGKYVECLLSVSKKLDVDGEVTGVFCFLQTASPELQQNTELGIEQKQLLHTGTQCQRQLSKILDDSDLDSIIDGYLDLEMVEFTMHQVFVACLSQVMTKSNAMGIHIINEVAEHIMTETLFGDSLRLQQVLADFLLISINFTPTGGQVVIAASLTKDQLGKSVHLANLEISITHDGVGVPETLLNQMFGRDGQESEEGISLLISRKLLKLMNGDVRYLREAGKSSFILTVELAAAQKLIA 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00020 1084 Gene3D - 200 563 IPR029016 -
Stsc151066g00020 1084 Pfam PAS fold 70 186 IPR013654 GO:0006355
Stsc151066g00020 1084 ProSiteProfiles Histidine kinase domain profile. 860 1080 IPR005467 -
Stsc151066g00020 1084 Coils Coil 399 419 - -
Stsc151066g00020 1084 SMART pas_2 750 819 IPR000014 -
Stsc151066g00020 1084 SMART pas_2 620 686 IPR000014 -
Stsc151066g00020 1084 Pfam Phytochrome region 415 590 IPR013515 GO:0006355|GO:0009584
Stsc151066g00020 1084 MobiDBLite consensus disorder prediction 1 24 - -
Stsc151066g00020 1084 FunFam Phytochrome 407 538 - -
Stsc151066g00020 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Stsc151066g00020 1084 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Stsc151066g00020 1084 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 966 1076 IPR003594 -
Stsc151066g00020 1084 SUPERFAMILY GAF domain-like 410 587 - -
Stsc151066g00020 1084 Gene3D - 917 1081 IPR036890 -
Stsc151066g00020 1084 Gene3D - 407 580 IPR043150 -
Stsc151066g00020 1084 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151066g00020 1084 SUPERFAMILY GAF domain-like 199 399 - -
Stsc151066g00020 1084 CDD PAS 629 735 IPR000014 -
Stsc151066g00020 1084 ProSiteProfiles PAS repeat profile. 748 803 IPR000014 -
Stsc151066g00020 1084 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 916 1073 IPR036890 -
Stsc151066g00020 1084 CDD PAS 762 873 IPR000014 -
Stsc151066g00020 1084 Pfam GAF domain 219 402 IPR003018 GO:0005515
Stsc151066g00020 1084 Pfam PAS fold 751 873 IPR013767 GO:0006355
Stsc151066g00020 1084 Pfam PAS fold 621 735 IPR013767 GO:0006355
Stsc151066g00020 1084 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
Stsc151066g00020 1084 SMART gaf_1 219 412 IPR003018 GO:0005515
Stsc151066g00020 1084 CDD HATPase_Phy-like 965 1076 IPR044767 -
Stsc151066g00020 1084 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Stsc151066g00020 1084 SMART HKATPase_4 966 1078 IPR003594 -
Stsc151066g00020 1084 FunFam Phytochrome 614 745 - -
Stsc151066g00020 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 188 IPR035965 -
Stsc151066g00020 1084 Gene3D PAS domain 79 322 - -
Stsc151066g00020 1084 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Stsc151066g00020 1084 Gene3D PAS domain 611 749 - -
Stsc151066g00020 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Stsc151066g00020 1084 Gene3D PAS domain 764 878 - -
Stsc151066g00020 1084 PANTHER TWO-COMPONENT HISTIDINE KINASE 883 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00020 Stsc-Chr151066 99593 103346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00020 1 1081 Histidine Kinase Gene Family AT1G09570 74.555 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00020 K12120 - gmx:100790763 1741.47