Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00017 ATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCATGATGTCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCGATGTTAAGAGGTTACATTCAGCTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGCGCATCAATCACATTTCTTGACACCCCCGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATCGTAGTGCTTGTTGTTGCTGCAGATGACGGAGTTATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCCATTGTAGTTGCAATTAATAAATGTGATAAGCCAGGTGCAAATCCTGAGAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGCGATGTTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACTGGACTGGATAACCTGGAAGAAGCTTTACTCCTTCAAGCTGAAATGATGGATCTTAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTTGTAGAAGCAAGGCTTGACAAAGGACGTGGTCCTTTGATAACTACCATAGTAAAGGCAGGGACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCGGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGCGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCTATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTGCTGGTAGGACAAGGAAATTTGAGGAGAACAGACTTAGGAGGAAGTTGAATGAGGACATCCCATCTTCATTGGAATCATCAGAGGAGGTTCCACAGAGGGTTGAGATGCCAGTAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTCTTGAATGTTGTTCACGTTGGTGTTGGGCCTATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCTACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACCCAGATAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAAGGAGCAAGTCAAAGGGACCTGATATTAAGATAGCTGGTTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACAGGAACCATGAGGCTGCTGAGAAGCGGGGAAGTTGTTTTCGAAGGAAATTGTGCGTCTCTTAAGCGAGAGACGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAATTATTAGCGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTGGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGTTAA 1758 0.4573 MTLVELAKRTGKSVSSLHDVLTNVGEKVESEFEPLSMDIAELAAMEVGVDVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSAGRTRKFEENRLRRKLNEDIPSSLESSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVLLNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRASIKLILHRVIYHLLEDIGNLIIEKAPGTFETQIAGQAEVLNIFEVKRSKSKGPDIKIAGCRVVEGFVARTGTMRLLRSGEVVFEGNCASLKRETQDVDTVKKGNECGLIISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00017 585 Gene3D Translation factors 468 570 - -
Stsc151066g00017 585 Gene3D Translation factors 237 351 - -
Stsc151066g00017 585 FunFam Translation initiation factor IF-2 61 236 - -
Stsc151066g00017 585 SUPERFAMILY Translation proteins 469 570 IPR009000 -
Stsc151066g00017 585 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 6 579 IPR015760 -
Stsc151066g00017 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 255 IPR027417 -
Stsc151066g00017 585 CDD IF2_mtIF2_II 240 333 IPR044145 -
Stsc151066g00017 585 NCBIfam small GTP-binding protein domain 67 220 IPR005225 GO:0005525
Stsc151066g00017 585 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 361 474 IPR036925 -
Stsc151066g00017 585 FunFam Translation initiation factor IF-2 469 572 - -
Stsc151066g00017 585 Hamap Translation initiation factor IF-2 [infB]. 2 571 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151066g00017 585 Pfam Elongation factor Tu GTP binding domain 69 225 IPR000795 GO:0003924|GO:0005525
Stsc151066g00017 585 CDD IF2_eIF5B 67 231 - -
Stsc151066g00017 585 FunFam Translation initiation factor IF-2 361 468 - -
Stsc151066g00017 585 CDD mtIF2_IVc 474 563 - -
Stsc151066g00017 585 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 234 IPR000795 GO:0003924|GO:0005525
Stsc151066g00017 585 Pfam Translation-initiation factor 2 354 456 IPR023115 -
Stsc151066g00017 585 Gene3D - 61 236 IPR027417 -
Stsc151066g00017 585 NCBIfam translation initiation factor IF-2 2 568 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151066g00017 585 SUPERFAMILY Translation proteins 238 320 IPR009000 -
Stsc151066g00017 585 Gene3D - 361 466 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00017 Stsc-Chr151066 90660 93812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00017 55 549 Eukaryotic Initiation Factors Gene Family AT1G76810 27.128 1.60e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00017 K02519 - gmx:100781314 995.727