Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00016 ATGGCTTGGCTGGAGCTTGGAAGGAAGAGAATTTATATGAATATTTCTAGAGCTTTGAATAAATCTTCATTTAGGCGTGTGGCAGGGTCAAGCAATGGATCTATTTATACTGCACAATCTGTTTATGCATCAGCAAGATGCATGCCAGACCTTATCAACCACTCATCCGTGGGGGTGGCTGGTTTCTCCATTGGGACTAAAGAAGGTGATATTAGGTGCTTCCATGCTAGTCCAGAAGTCTGGGCAAGAAGAGGTGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTGAGAAAGGAAGGTAGAAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCCAATTCTATTCCTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCATGATGTCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCGATGTTAAGAGGTTACATTCAGCTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGCGCATCAATCACATTTCTTGACACCCCCGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATCGTAGTGCTTGTTGTTGCTGCAGATGACGGAGTTATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCCATTGTAGTTGCAATTAATAAATGTGATAAGCCAGGTGCAAATCCTGAGAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGCGATGTTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACTGGACTGGATAACCTGGAAGAAGCTTTACTCCTTCAAGCTGAAATGATGGATCTTAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTTGTAGAAGCAAGGCTTGACAAAGGACGTGGTCCTTTGATAACTACCATAGTAAAGGCAGGGACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCGGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGCGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCTATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTGCTGGTAGGACAAGGAAATTTGAGGAGAACAGACTTAGGAGGAAGTTGAATGAGGACATCCCATCTTCATTGGAATCATCAGAGGAGGTTCCACAGAGGGTTGAGATGCCAGTAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTCTTGAATGTTGTTCACGTTGGTGTTGGGCCTATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCTACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACCCAGATAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAAGGAGCAAGTCAAAGGGACCTGATATTAAGATAGCTGGTTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACAGGAACCATGAGGCTGCTGAGAAGCGGGGAAGTTGTTTTCGAAGGAAATTGTGCGTCTCTTAAGCGAGAGACGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAATTATTAGCGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTGGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGTTAA 2163 0.4535 MAWLELGRKRIYMNISRALNKSSFRRVAGSSNGSIYTAQSVYASARCMPDLINHSSVGVAGFSIGTKEGDIRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPNSIPDKTVEIFEGMTLVELAKRTGKSVSSLHDVLTNVGEKVESEFEPLSMDIAELAAMEVGVDVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSAGRTRKFEENRLRRKLNEDIPSSLESSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVLLNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRASIKLILHRVIYHLLEDIGNLIIEKAPGTFETQIAGQAEVLNIFEVKRSKSKGPDIKIAGCRVVEGFVARTGTMRLLRSGEVVFEGNCASLKRETQDVDTVKKGNECGLIISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00016 720 SUPERFAMILY Translation proteins 373 455 IPR009000 -
Stsc151066g00016 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151066g00016 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 369 IPR000795 GO:0003924|GO:0005525
Stsc151066g00016 720 Gene3D - 496 601 IPR036925 -
Stsc151066g00016 720 Gene3D - 196 371 IPR027417 -
Stsc151066g00016 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Stsc151066g00016 720 CDD IF2_eIF5B 202 366 - -
Stsc151066g00016 720 Pfam Elongation factor Tu GTP binding domain 204 360 IPR000795 GO:0003924|GO:0005525
Stsc151066g00016 720 FunFam Translation initiation factor IF-2 604 707 - -
Stsc151066g00016 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 496 609 IPR036925 -
Stsc151066g00016 720 FunFam Translation initiation factor IF-2 496 603 - -
Stsc151066g00016 720 NCBIfam small GTP-binding protein domain 202 355 IPR005225 GO:0005525
Stsc151066g00016 720 FunFam Translation initiation factor IF-2 196 371 - -
Stsc151066g00016 720 CDD IF2_mtIF2_II 375 468 IPR044145 -
Stsc151066g00016 720 Gene3D Translation factors 372 486 - -
Stsc151066g00016 720 Gene3D Translation factors 603 705 - -
Stsc151066g00016 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 95 714 IPR015760 -
Stsc151066g00016 720 NCBIfam translation initiation factor IF-2 127 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151066g00016 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 390 IPR027417 -
Stsc151066g00016 720 CDD mtIF2_IVc 609 698 - -
Stsc151066g00016 720 Pfam Translation-initiation factor 2 489 591 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00016 Stsc-Chr151066 88595 93812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00016 190 684 Eukaryotic Initiation Factors Gene Family AT1G76810 27.128 9.24e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00016 K02519 - gmx:100781314 1145.95