Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00011 ATGACTTCTTTCCTAGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGAACTTCACAAGAGGCCACCTCTTCCTTCTTCCTCTCTTTCCTTGGACACCAAGTCCCACTTCAACAACGTTCTCAGAGCACACCTTTCTACTAACAATGCCAAGGGAACTTTTAATAAGCCTACTCTTACTTTTGTTACTTCTGCCATTGCCACCCCTAATTCTTCCGTACTAAGCGAAGAAGCCTTCAAGGGCATAGGTAGCGGCGATGACTTCCCTGAAACCGACGACGATGACTTTCTCGGCGGCTTTGGCTCTGAAACCGACGACGCCTCTTCTGCTCCTAGCTCTGAAGAACTCGACGTTGCCAAGCTTGGTCTTCCTTCGCGCCTCGTTGATTCTCTCAACAAGCGTGGGATTACGCAACTTTTCCCCATTCAGAGAGCGGTGTTGGTGCCGGCATTGGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACATTAGCATTTGGGATTCCCATTATTAAAGGCCTCACTGAAGATGAAAATTCAAGTTCTCTCAGACGGGGTCGTCTTCCTAGAGTCTTGGTCCTTGCACCTACCAGGGAGCTAGCAAAGCAAGTGGAGAAGGAGATAAAGGAGTCTGCACCATATCTGAGCACGGTTTGTGTTTATGGGGGTGTTTCCTATGTTACTCAACAAAGTGCACTTTCGCGTGGAGTCGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTGATCAATGGGAATAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTCGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAACTTGGGTGAAGAAATTGGCACGAAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGTGATGAAGAAGAAAAGCTCGCCGAAGGGATAAAACTTTACGCTCTATCAGCAACGGCCACTTCAAAGCGGACAATTCTTTCCGATCTTATAAGTGTTTATGCCAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGCATAATGTCTGAAGCATTGCATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCACGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCGGAGACTTTTGTACACCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTGGAGCGTGATGTCGGCTGCAAATTTGAATTTATCAGTCCACCGGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGCTGTTGCCACACTCAATAGGGTTCATCCTGAGTCTGTTGAGTTTTTTACACCAACTGCACAAAAACTGATTGAAGAACAGGGAACAAGTGCCCTAGCAGCCGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCATCCCGGTCATTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATGGTAGAAGATACTTCTCGGCAAGATCAGTCACTGGGTTTCTTGCTGATGTTTATTCTCCAGCTGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCTGTCTTTGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGACATACCACCTGGAAACACTATAACCAAGGTTACCAAGTTACCTGCTTTGCAAGATGATGGGCCAGCAAGTGATTTCTATGGGAAGTTCTCTGACAGAGATCGTAGTAACCGAAGAGGTTCTAGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTTAGAAGCTCACGGGGATCCTATGGGGGGCGCGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGAGGCAATAGAAGTAATAATAAAACTGGCAGCAGCTGGTCTCGAGCTGGAAGATTCAGTGCGGATGATTGGTCAACTGGCGGTAGACGATCATCAGGCAGATCTTCATCGTCAGACAGAGGTGGTTTTGGAGGGTCATGTTTTAACTGTGGGGAGTCTGGTCATCGAGCTTCGGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2307 0.4569 MTSFLGVSSIYQTPSTTLELHKRPPLPSSSLSLDTKSHFNNVLRAHLSTNNAKGTFNKPTLTFVTSAIATPNSSVLSEEAFKGIGSGDDFPETDDDDFLGGFGSETDDASSAPSSEELDVAKLGLPSRLVDSLNKRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDENSSSLRRGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPTWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQAVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDGRRYFSARSVTGFLADVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTITKVTKLPALQDDGPASDFYGKFSDRDRSNRRGSSSGSRDRRGGFRSSRGSYGGRDSDDDFGDSYRRGGNRSNNKTGSSWSRAGRFSADDWSTGGRRSSGRSSSSDRGGFGGSCFNCGESGHRASDCPNKRSFF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00011 768 CDD SF2_C_DEAD 351 468 - -
Stsc151066g00011 768 Gene3D - 119 329 IPR027417 -
Stsc151066g00011 768 SMART helicmild6 379 459 IPR001650 -
Stsc151066g00011 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 499 IPR001650 -
Stsc151066g00011 768 CDD GUCT_Hera 553 632 - -
Stsc151066g00011 768 FunFam ATP-dependent RNA helicase RhlE 109 328 - -
Stsc151066g00011 768 SUPERFAMILY Retrovirus zinc finger-like domains 729 766 IPR036875 GO:0003676|GO:0008270
Stsc151066g00011 768 ProSiteProfiles Zinc finger CCHC-type profile. 748 763 IPR001878 GO:0003676|GO:0008270
Stsc151066g00011 768 MobiDBLite consensus disorder prediction 701 744 - -
Stsc151066g00011 768 MobiDBLite consensus disorder prediction 628 768 - -
Stsc151066g00011 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 325 IPR014001 -
Stsc151066g00011 768 Pfam Zinc knuckle 747 763 IPR001878 GO:0003676|GO:0008270
Stsc151066g00011 768 CDD DEADc 129 326 - -
Stsc151066g00011 768 Gene3D - 342 546 IPR027417 -
Stsc151066g00011 768 Pfam GUCT (NUC152) domain 546 645 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc151066g00011 768 Pfam Helicase conserved C-terminal domain 352 459 IPR001650 -
Stsc151066g00011 768 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 110 682 - -
Stsc151066g00011 768 MobiDBLite consensus disorder prediction 653 700 - -
Stsc151066g00011 768 SMART c2hcfinal6 747 763 IPR001878 GO:0003676|GO:0008270
Stsc151066g00011 768 SMART ultradead3 137 342 IPR014001 -
Stsc151066g00011 768 MobiDBLite consensus disorder prediction 85 117 - -
Stsc151066g00011 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 480 IPR027417 -
Stsc151066g00011 768 FunFam Nucleolar RNA helicase II 347 537 - -
Stsc151066g00011 768 Pfam DEAD/DEAH box helicase 142 314 IPR011545 GO:0003676|GO:0005524
Stsc151066g00011 768 Gene3D - 737 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00011 Stsc-Chr151066 69232 73781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00011 92 481 Eukaryotic Initiation Factors Gene Family AT1G72730 36.591 2.38e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151066g00011 - - gmx:100779706 1105.51