Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151066g00005 ATGGGGGGTGCATGTGGGTACGGGAATCTGTACACAGACGGATACGGTACAAAGACCGCGGCTCTGAGCACCGTTCTGTTTAACGACGGCAAGGCATGCGGCGGTTGCTATCAGATTGTTTGTGACGCAAGCAAAGTCCCCCAATGGTGCCTTAAGGGCACTTACATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGCAACCCTCCACGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACCATCGCCAAGTACAAGGCCGGCATCGTACCCATACTGTACAGGAAAGTTGGATGCAAAAGGAGTGGAGGCATGAGATTCAGCATCAATGGAAGGGACTACTTTGAATTAGTGACAATAAGCAATGTAGGTGGAGTTGGGGAGATATCGCAAGTATGGATAAAAGGGTCAAAGAAGAATGTGTGGGAAGCCATGACCAGGAACTGGGGTGTTAACTGGCAAAGCTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCAAAGTTCAACTCACCAATGGAAGAACCCGTACAGCTTATAACGTAGCACCCTCCAATTGGAAATTTGGCCAGTCTTTCACCACTAATGTTCAGTTCTAA 636 0.478 MGGACGYGNLYTDGYGTKTAALSTVLFNDGKACGGCYQIVCDASKVPQWCLKGTYITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRKVGCKRSGGMRFSINGRDYFELVTISNVGGVGEISQVWIKGSKKNVWEAMTRNWGVNWQSLSYLNGQSLSFKVQLTNGRTRTAYNVAPSNWKFGQSFTTNVQF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151066g00005 211 Gene3D - 118 211 IPR036749 -
Stsc151066g00005 211 PRINTS Expansin/Lol pI family signature 155 169 IPR007118 GO:0005576
Stsc151066g00005 211 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc151066g00005 211 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Stsc151066g00005 211 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Stsc151066g00005 211 PRINTS Expansin/Lol pI family signature 100 116 IPR007118 GO:0005576
Stsc151066g00005 211 SUPERFAMILY PHL pollen allergen 114 206 IPR036749 -
Stsc151066g00005 211 PRINTS Expansin signature 56 66 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 92 105 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 116 128 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 128 149 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 43 54 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 193 209 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Stsc151066g00005 211 PRINTS Expansin signature 75 92 IPR002963 GO:0009664
Stsc151066g00005 211 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 117 IPR007112 -
Stsc151066g00005 211 FunFam Expansin 117 211 - -
Stsc151066g00005 211 Pfam Expansin C-terminal domain 118 196 IPR007117 -
Stsc151066g00005 211 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 127 207 IPR007117 -
Stsc151066g00005 211 Pfam Lytic transglycolase 19 107 IPR009009 -
Stsc151066g00005 211 PANTHER EXPANSIN-A15 1 207 IPR002963 GO:0009664
Stsc151066g00005 211 CDD DPBB_EXPA_N 1 112 - -
Stsc151066g00005 211 SUPERFAMILY Barwin-like endoglucanases 1 135 IPR036908 -
Stsc151066g00005 211 Gene3D - 1 113 IPR036908 -
Stsc151066g00005 211 SMART dpbb_1 19 107 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151066g00005 Stsc-Chr151066 25961 27073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151066g00005 1 211 Expansin Gene Family AT4G01630 79.621 7.20e-131 367