Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151065g00015 ATGGTTAGCGAAGAAGAGAAGGTTCTAGAGGAACAACTTGACCATCAATTGCAAGAACAAAGGGATTCTCTCTCTGCTGTCGATGACGCTCTTCTCTCTGATCCATCCAACCCCGACCTTCTCGCGGTTCATGAAGAACTTGTTCAGGCAATTAAGGATGCAGAGGAAGCACTTCTTCACCTAAAACGTGCAAGATTATTACAGGAAGCAGATTTGGTGCTGCGCAGCACTGATCTCTTTGCTGAAGAAGAGAAAGTAGAGCCTCTTGATCCCGCAGATGTTGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTGCAGTTGGATAAGTCAGCAGCGAAGATTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAATTGATGTTCAATTGTTGTCGCTGAAGAAATATGTCCCGACAATATGGAAGCCATCCCTCGCGGGTTCAAGTATATGGGCAGTCTCAAATTCTCATGCGGGTATTTGGAAGCAAGCTGAGCTTGAGTCTTGGGATGAGGAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGCCTGAACAAATGGTATTGTCCGAGTATGCGGAAGGAATGCTAGATCCCATAACAGTGAAAGTCCTACCAGCCAAACAATCCTTAGATCATGCACTTGAGTCTAAGAAAGGAGAAGAGGACACAGAGAAACAACGCAAGAAACGGAGCAGAGGCGGTAAAAGAAAGCGCGACAAGAAAATCATGGAAGCAATTCGGGCAGCAAAAGAAGAAGAAGAATCGAACGAGGACGTCTTTACGCTAATAAATAATCAGCTGGCAGTGCACAGTGAAGCTATAAATGGGGGATCAGGGAAAAAGCAGAGCAAAGATTCCAGTGAAGGTAAAAAGGTGGATAGGCGAACGTTGATTGCGTATGAGGACGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCTGAGACACGCAAGGCGTTAGCCAAAGCTGAAGCCACGCATGCCTCTGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1254 0.4474 MVSEEEKVLEEQLDHQLQEQRDSLSAVDDALLSDPSNPDLLAVHEELVQAIKDAEEALLHLKRARLLQEADLVLRSTDLFAEEEKVEPLDPADVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKISFLTPTSENMLICKFFLQQRCRFGTNCRLSHGIDVQLLSLKKYVPTIWKPSLAGSSIWAVSNSHAGIWKQAELESWDEEAGVGQVVFRDDGSSAKLGPEQMVLSEYAEGMLDPITVKVLPAKQSLDHALESKKGEEDTEKQRKKRSRGGKRKRDKKIMEAIRAAKEEEESNEDVFTLINNQLAVHSEAINGGSGKKQSKDSSEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAKAEATHASASNAVVSKEKEKRWLKF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151065g00015 417 Coils Coil 346 373 - -
Stsc151065g00015 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 242 - -
Stsc151065g00015 417 Gene3D - 91 141 - -
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 261 289 - -
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151065g00015 417 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 261 277 - -
Stsc151065g00015 417 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Stsc151065g00015 417 Gene3D - 142 186 - -
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 396 417 - -
Stsc151065g00015 417 Coils Coil 377 411 - -
Stsc151065g00015 417 Coils Coil 44 64 - -
Stsc151065g00015 417 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 1 31 - -
Stsc151065g00015 417 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Stsc151065g00015 417 MobiDBLite consensus disorder prediction 322 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151065g00015 Stsc-Chr151065 102934 108176 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151065g00015 zf-CCCH_4 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151065g00015 - - qsa:O6P43_021215 540.036