Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151064g00029 ATGGAGGTTCCAGAGAAGGAAGGGAAGATTGAAAGCCATACAACGTCGGCAGCAGCCTTTGTTGAAGGCGGGATTCAAGAAGCCTGTTATGATGCTTGCAGTATATGCCTTGAGGAGTTTTGCGAAAGTGATCCTGCGGCGGTGACTAATTGCAAACACGAGTTCCACCTACACTGCATTCTTGAATGGTGTCAAAGAAGCTCCCAATGTCCCATGTGTTGGCAATCTGTTAGCTTGAAGGATGGTACCAGTCAAGAATTGCTCGAGGCAGTAGAGCAGGAGAGGAGCATAAGGGTTACCCCATCAAGAAATGTTGATATTTTTCGTCATCCAGCCATAATTGCAGCAGGAGATGATCCTGAATTGCAGCAGTTTGAAGAGCGAATAATTCAACATATAGCTGCTGCGGCAGCAATGAGGAGAGCACGATATGTTGGTCGCAGGGAAGGAACAAGTACTAGGTCATCTGCTCATGTCCATCCACAGTTCTTACTATTCTCGACGCAGCCGAGTGTACATCCATCTAGTCCTGAATCTGCTGCTGGAGACGGAAATGAACTGGCTGAAATCCCTGTAGGAAGTCCATCTACGCCACTTACATCCGATGGAGACGAACCATCAATGTCTCAGCTGATTGCACATATTCAAAATCGGAGCTCTTCTTTAGCTCACAGGTCTACTGTCTCAGCTACAAACCGCGAAGGGATTTACCCTAATGAAAGTTCTACCACTCATTCTTCGACTATGAACGAAGATGTAGCCGGACCATCAGATCTCCAGTCATTTTCTGATTCTTTGAGGTCCAAATTTAATGCAATGTCCCTGAGATACAAAGAATCCCTTTCGAAGGGCACAAGGGGATGGAAAGATAGGCTGTTCTCTCGAAATTCTTCTGTGTCGGAACTCGGTTCAGAAGTCAAGAGAGAGTTGAATGCTGGAATTGCAAGTGTGTCCCGGTTGATGGAGCGTCTTGAAACTAGAGAGAATAATAGAGTTGAGGACTCTTCTTTGTCAAATCATTCGACTGATTCCTCCATTGCTGAGACAAGCAACCGGCGCAATGTGGAAGCTCTTGGACGGAACTCTTCGCCCGGCAACAATTCTCCGGCCACTTTTTCTGCTGGCTCAGATTCAAATTAA 1140 0.4632 MEVPEKEGKIESHTTSAAAFVEGGIQEACYDACSICLEEFCESDPAAVTNCKHEFHLHCILEWCQRSSQCPMCWQSVSLKDGTSQELLEAVEQERSIRVTPSRNVDIFRHPAIIAAGDDPELQQFEERIIQHIAAAAAMRRARYVGRREGTSTRSSAHVHPQFLLFSTQPSVHPSSPESAAGDGNELAEIPVGSPSTPLTSDGDEPSMSQLIAHIQNRSSSLAHRSTVSATNREGIYPNESSTTHSSTMNEDVAGPSDLQSFSDSLRSKFNAMSLRYKESLSKGTRGWKDRLFSRNSSVSELGSEVKRELNAGIASVSRLMERLETRENNRVEDSSLSNHSTDSSIAETSNRRNVEALGRNSSPGNNSPATFSAGSDSN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151064g00029 379 MobiDBLite consensus disorder prediction 327 379 - -
Stsc151064g00029 379 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Stsc151064g00029 379 MobiDBLite consensus disorder prediction 218 252 - -
Stsc151064g00029 379 Coils Coil 307 327 - -
Stsc151064g00029 379 MobiDBLite consensus disorder prediction 335 379 - -
Stsc151064g00029 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 81 - -
Stsc151064g00029 379 MobiDBLite consensus disorder prediction 168 206 - -
Stsc151064g00029 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Stsc151064g00029 379 SMART ring_2 33 73 IPR001841 -
Stsc151064g00029 379 SUPERFAMILY RING/U-box 31 82 - -
Stsc151064g00029 379 Pfam Ring finger domain 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151064g00029 Stsc-Chr151064 214331 217800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151064g00029 31 81 C3H Transcription Factor Family AT4G00335 47.059 1.23e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151064g00029 K19043 - gmx:100803582 493.041