Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151064g00020 ATGGCGGCAGCTTTCAAGTCGCCGCCATCAAGTGACCACTCAACCAGTGGAATGCTAGATAGTGGTGGCGGTGGCAGTGGTACGTTATCAAGGAAGTCGAGCCGGAGGATGATGATTGCGGCTTCCCCGAGCCGCGGAGGAAAGAACACACACATAAGGAAGTCAAGGAGTGCTCAAATAAGCCAAATGAAGTTTGAGTTGGATGATGTGAGCAGTGGAGCTGCTCTTAGTAGAGCTTCAAGTGCAAGCTTAGGTTTCTCATTCTCATTCACTGGATTCGCCATGCCACCTGATGAAATTGCTGATTGTAAACCCTTCAGTGATGATGATATTCCTGAAGATATTGAAGCTGGAACTAAGCCAAAGTTTCAAACTGAGCCTACTCTTCCAATCTATCTTAAGTTCAAAGATGTGAGCTACAAGGTAGTGATGAAAGGCATGACAAGTAGTCATGAAAAGGAAATATTGAATGGGATAAGTGGATGTGTGAATCCAGGTGAAGTCTTAGCTTTGATGGGTCCCTCAGGCAGTGGAAAAACCACTCTCTTGAATCTCTTAGGTGGCAGAATATCCCAATCCACCATTTCTGGTTCCATCACTTACAATGATCAATCATATTCCAAGTTCTTGAAGAGCAGGATAGGGTTTGTGACACAAGATGATGTTCTGTTTCCTCACTTAACTGTGAAAGAGACATTGACATATGCAGCCAGGCTTAGACTTCCAAAGACATACACAAAGGAGGAAAAGGAAAAAAGAGCTCTTGATGTCATCTATGAACTTGGTTTGGAGAGGTGCCAAGACACAATGATTGGAGGTTCCTTTGTTCGTGGAGTATCTGGTGGAGAGAGGAAGAGAGTTAGTATTGGAAATGAGATCATAATCAACCCTTCTCTTCTTTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCATTGAGAATAGTTCAGATGCTTCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATTCACCAACCATCAAGCAGACTCTTTCACAGTTGGTATGAGCAATTCTCCATATTGTTCTGGAGAGGAATCAAAGAAAGGAAGCATGATTACTTTAGCTGGTTGAGAATCACACAAGTTCTATCCACTGCAATCATCTTGGGATTACTTTGGTGGCAATCAGATACTAAGAACACAAAAGATCTGCAAGATCAGGCCGGACTGCTCTTCTTTATAGCAGTCTTCTGGGGATTCTTCCCAGTTTTCACAGCAATATTCACATTCCCTCAAGAGAGAGCAATGCTGAGTAAGGAGCGAGCGGCCGATATGTACAGACTAAGTGCATATTTCTTGGCTAGAACTACAAGTGACCTTCCATTAGACTTGATATTACCAGTACTATTTCTCCTAGTTGTTTACTTCATGGCTGGTTTGAGACTCAGTGCTACTCCCTTTGTCCTCACCATCCTCACTGTTTTCCTCTGCATCGTGGCGGCTCAGGGACTTGGACTTGCTATTGGAGCAACACTTATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTCATGACTTTCATGCTGGCTGGAGGGTTCTTTGTGCAGAGAGTTCCCATATTCATATCTTGGATCCGGTACATGTCATTCAACTACCACACCTACAAGCTGCTGCTAAAAGTGCAATATGAACACCTAACTCCTGTTGTAAATGGGATCAAAATTGACAGTGGTGTGTCAGAGGTAGCTGCTCTCATAGCGATGGTTTTCGGCTACCGTTTCTTGGCATATCTTTCGTTGCGGCGCATGAAGCTTCAATCCGGAGCATGA 1812 0.4371 MAAAFKSPPSSDHSTSGMLDSGGGGSGTLSRKSSRRMMIAASPSRGGKNTHIRKSRSAQISQMKFELDDVSSGAALSRASSASLGFSFSFTGFAMPPDEIADCKPFSDDDIPEDIEAGTKPKFQTEPTLPIYLKFKDVSYKVVMKGMTSSHEKEILNGISGCVNPGEVLALMGPSGSGKTTLLNLLGGRISQSTISGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTYTKEEKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHSWYEQFSILFWRGIKERKHDYFSWLRITQVLSTAIILGLLWWQSDTKNTKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSATPFVLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPVVNGIKIDSGVSEVAALIAMVFGYRFLAYLSLRRMKLQSGA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151064g00020 603 Gene3D - 132 345 IPR027417 -
Stsc151064g00020 603 Pfam ABC-2 type transporter 348 557 IPR013525 GO:0016020|GO:0140359
Stsc151064g00020 603 Pfam ABC transporter 156 307 IPR003439 GO:0005524
Stsc151064g00020 603 ProSitePatterns ABC transporters family signature. 279 293 IPR017871 GO:0005524|GO:0016887
Stsc151064g00020 603 MobiDBLite consensus disorder prediction 8 37 - -
Stsc151064g00020 603 MobiDBLite consensus disorder prediction 1 54 - -
Stsc151064g00020 603 FunFam ABC transporter G family member 22 143 360 - -
Stsc151064g00020 603 SMART AAA_5 165 372 IPR003593 GO:0016887
Stsc151064g00020 603 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 100 344 - -
Stsc151064g00020 603 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 133 381 IPR003439 GO:0005524
Stsc151064g00020 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151064g00020 Stsc-Chr151064 168584 177033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151064g00020 131 340 Calmodulin-binding Proteins AT2G36910 29.302 1.52e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151064g00020 K05681 - gmx:100798801 554.288