Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151063g00002 ATGAAAGATGCTGTGGCAGCTTCAGCTTCAGCTTCAGCTTCAGGGTATTATGTGTATCCTCCACCACAAGCAAGCTATGAGGAGGTTGCAAACAATCCCAAGCTCTTCATAGAAACCTTGGAGAAGCTCCACTCTTCTATGGGCACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAATTAGATTTGCATCGACTCTTTGTTGAAGTAACTTCCAGAGGAGGTATTGAGAAGATAATCAAAGAGAGAAAATGGAAGGAAGTAACTGCAACTTTCAATTTTCCGTCAACAGCTACAAATGCCTCTTTTGTTCTGCGGAAGTACTATGCTTCATTGCTTTACCATTATGAACAAATCTACTATTTCAAAGCCCCTGGATGGAGCCCAGCTGCTTCTAGCTTTTTCTCTACAGCTGGTGGCCTGCAGTGTCAATCATCCATTCCAGTTCCAGTGCAAAAGGCACAGTTTATGGCGACATCATCGGGATTTCAATCACCGGTCTTTCCACAGTCGAGCGCTAATGCTGCTGAATTGTCTGAAGCCATGATACAATCTTCAGGAGGGTCTCAGGTGATTGGGGTCATTGATGGAAAGTTTGAAAGTGGCTATCTAGTTACTGTAACAATAGGTTCAGAGAAACTTAAAGGGGTGCTCTATCAGGCTCCACAGAACCCTGGATTGCCTACTTCTCATCACGGAGTTTTGGGTAACAACAGTGGTTCCTCTGCCCCGTTAGGCGTCCATAGGCGCCGGCGCAGAAAGAAATCAGAAATAAAGCGGAGAGATCCTGCTCATCCGAAACCCAACAGAAGTGGTTACAATTTCTTTTTCGCGGAACAGCATGCAAGGCTAAAAGCACACCATCATGGGAAGGACAGGGAGATTAGTAGGATCATTGGCGAACTCTGGAACAAGTTGAATGAATCAGAAAGAGTAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTATAGAGTGGAGATGGAGGATTATCGCGAGAAGCAGAAGATGGGCCAAGTTATCAGTGATGCTGTGCCTCTGCAGCAGCGGCTTCCTGAGGACATGAAACTGGACGAAGCGGATGGCGACTCTTTTCAAACACCAGAGGAAAGCAGCACTGGTGGAAGTGACTATGAAGATGATAGAGCTATGGACAAAGATTTCGATGAGGATGCATCGCCGGTTGCTGGCTTGGGTGCTGAATCTAGCTGTTTGGGTTCAGAGAAGTCACCTAATGGAGGTTTATGA 1251 0.4572 MKDAVAASASASASGYYVYPPPQASYEEVANNPKLFIETLEKLHSSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAPGWSPAASSFFSTAGGLQCQSSIPVPVQKAQFMATSSGFQSPVFPQSSANAAELSEAMIQSSGGSQVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPGLPTSHHGVLGNNSGSSAPLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKAHHHGKDREISRIIGELWNKLNESERVVYQEKAMKDKERYRVEMEDYREKQKMGQVISDAVPLQQRLPEDMKLDEADGDSFQTPEESSTGGSDYEDDRAMDKDFDEDASPVAGLGAESSCLGSEKSPNGGL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151063g00002 416 MobiDBLite consensus disorder prediction 376 393 - -
Stsc151063g00002 416 SMART hmgende2 265 334 IPR009071 -
Stsc151063g00002 416 MobiDBLite consensus disorder prediction 246 260 - -
Stsc151063g00002 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Stsc151063g00002 416 Coils Coil 315 335 - -
Stsc151063g00002 416 SMART ARID_2 27 117 - -
Stsc151063g00002 416 MobiDBLite consensus disorder prediction 354 416 - -
Stsc151063g00002 416 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Stsc151063g00002 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 371 - -
Stsc151063g00002 416 MobiDBLite consensus disorder prediction 228 244 - -
Stsc151063g00002 416 FunFam High mobility group B protein 15 248 343 - -
Stsc151063g00002 416 Gene3D High mobility group box domain 250 345 IPR036910 -
Stsc151063g00002 416 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Stsc151063g00002 416 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Stsc151063g00002 416 MobiDBLite consensus disorder prediction 228 274 - -
Stsc151063g00002 416 SMART bright_3 31 122 IPR001606 GO:0003677
Stsc151063g00002 416 FunFam High mobility group B protein 15 24 135 - -
Stsc151063g00002 416 SUPERFAMILY HMG-box 254 337 IPR036910 -
Stsc151063g00002 416 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Stsc151063g00002 416 CDD HMG-box_AtHMGB9-like 266 332 - -
Stsc151063g00002 416 Gene3D - 23 126 IPR036431 GO:0003677
Stsc151063g00002 416 Pfam HMG (high mobility group) box 266 333 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151063g00002 Stsc-Chr151063 5750 8724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151063g00002 22 362 ARID Transcription Factor Family AT1G04880 64.306 1.41e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc151063g00002 ARID 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151063g00002 - - gmx:100783284 572.392