Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151062g00029 ATGGATCGAGAGAGTGGATTGAGAATGAATCGACGGATACATGGGGATGTTCGGGGTTTTGATTCCTTTGTTCCTTCAAGAAGCCTCAATATTGTTCATCATAACGTTGATTCACATTGTGTTCTTGATGCTTGTGACAATGTTATGATGTATGGCATGACACAGTCTAATGGGATTCAACATCAACTTGATTTCAATACGAGTTTTCAAGATTCACCGCCTCCTGACTTATATTATTCTGGTCGGAATCCTTCATCAAGTACTGGTGCTTTACCCCTGCCTCAAAATTACAGAGCATCTCACCAGTCATCAAGATTTTCAGCTCCCAATTTTCATCAAAGCTCAATACACAATTCAAGTTCAAGTTTTGGGATATATTATCGTGCATCTGGTAACAGACGCAGTCGTGGATTTCCTCGCTATTCAAGGCACCAGAACTTGTATCTTCCTACAGCTACTGCATCGTTTCATCAACTTCAGTCAAATCCTTTGCACAGTGCTGCAGTACACTACTCACGTGACAGTTCCGAGGTGCGTCCCAGGCATGCTGGCCCTGTACCAACCCCCGGTAGGCAAATGTATCGGCGCAATAGAAGAGGACTTCCCAGAACAAATCTTGGACAGGAGAATTTTCGTCGGGTGGACTTAGTCCAAGTTGATGATATTGGGATGCTTGTTAGAGATGCTGAAGATATGTCTTATGAGCGATTGAATGCATTGGGAGAGCAGATTGGCAATGTAAGCACCGGTTTATCGGACGAAACAATAACCAATCAAATGAAGACAAAAGCATATTTAATGGCTGCTGATGCTGTTAATTTGGAGGAGGCAACTTCTCAGGAGTTGGAAGCTGATCTTTGTGTAATATGCCAGGATGAATATAAGAAGCAAGATATGCTTGGAGTTCTTGAATGTGGGCATGAATTTCATGCTGATTGTTTGAGGAAATGGTTGCTTGTGAGAAATGTCTGCCCCATGTGTAAATCACAAGCATTGATTCCTGCAGTGGAAAGTGGAAACTAA 1023 0.4242 MDRESGLRMNRRIHGDVRGFDSFVPSRSLNIVHHNVDSHCVLDACDNVMMYGMTQSNGIQHQLDFNTSFQDSPPPDLYYSGRNPSSSTGALPLPQNYRASHQSSRFSAPNFHQSSIHNSSSSFGIYYRASGNRRSRGFPRYSRHQNLYLPTATASFHQLQSNPLHSAAVHYSRDSSEVRPRHAGPVPTPGRQMYRRNRRGLPRTNLGQENFRRVDLVQVDDIGMLVRDAEDMSYERLNALGEQIGNVSTGLSDETITNQMKTKAYLMAADAVNLEEATSQELEADLCVICQDEYKKQDMLGVLECGHEFHADCLRKWLLVRNVCPMCKSQALIPAVESGN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151062g00029 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 332 IPR045191 GO:0061630
Stsc151062g00029 340 FunFam E3 ubiquitin ligase BIG BROTHER 247 332 - -
Stsc151062g00029 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 332 IPR013083 -
Stsc151062g00029 340 MobiDBLite consensus disorder prediction 173 195 - -
Stsc151062g00029 340 CDD RING-H2_RNF24-like 285 331 - -
Stsc151062g00029 340 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Stsc151062g00029 340 MobiDBLite consensus disorder prediction 74 95 - -
Stsc151062g00029 340 Pfam Ring finger domain 286 328 IPR001841 -
Stsc151062g00029 340 SUPERFAMILY RING/U-box 280 332 - -
Stsc151062g00029 340 SMART ring_2 287 327 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151062g00029 Stsc-Chr151062 190060 193173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151062g00029 191 332 C3H Transcription Factor Family AT2G15530 40.385 4.50e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151062g00029 K19041 - adu:107478552 257.299