Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151061g00042 ATGGGGAGAAAGCCTTGTTGCTCAAAAGGTGAAGACTTGAACAGAGGTGCTTGGATTGCTGATGAAGACAAAATCCTCGCAGACTACATTAGGGTTCATGGCCACGGAAAATGGAGCACCCTTCCCCAAAAAGCAGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGACCAGATATCAAGAGAGGCAATATATCTGAAGATGAAGAAGACCTCATCATTAGGCTTCACAAACTCCTTGGAAATAGGTGGTCTCTTATAGTCGGAAGGCTACCTGGTAGAACAGACAATGAAATAAAAAATTATTGGAATAGTCATTTGCGTAAAAGGGGAAGCAAGGATGATCACAATATAAAAAGAAGCACTTTTTCAGAATCATCACCAGCTGCTGCTCCTCCTAATGTAATCCGTACAAAGGCTACCAAGATCTCTAAGCCAGTATTATTCATAAATAATAATAATCCACCACCACTCACTAATGATGCAAATGCAGAAGAATCAAGGCCCTTTCTTGTGGATAATGTTGCTTCTAAAGCCAACACTAATGATGATGATTCAATAAGTAACAACATCATAATGCAACCTGCTACTACTACCAGCTGTAGTGGCTCGTTTCTGCCATTCCTCAATGAAGATGATGACAAACCATTCTCACCATCTTTTCTTTTAGACTATGATATTGAGAACGTCTGCTTATATGATCTTCTCAACTCAGATTGA 738 0.3916 MGRKPCCSKGEDLNRGAWIADEDKILADYIRVHGHGKWSTLPQKAGLKRCGKSCRLRWMNYLRPDIKRGNISEDEEDLIIRLHKLLGNRWSLIVGRLPGRTDNEIKNYWNSHLRKRGSKDDHNIKRSTFSESSPAAAPPNVIRTKATKISKPVLFINNNNPPPLTNDANAEESRPFLVDNVASKANTNDDDSISNNIIMQPATTTSCSGSFLPFLNEDDDKPFSPSFLLDYDIENVCLYDLLNSD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151061g00042 245 Gene3D - 15 67 - -
Stsc151061g00042 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc151061g00042 245 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc151061g00042 245 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc151061g00042 245 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc151061g00042 245 CDD SANT 72 113 IPR001005 -
Stsc151061g00042 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc151061g00042 245 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Stsc151061g00042 245 FunFam MYB-related transcription factor 14 67 - -
Stsc151061g00042 245 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc151061g00042 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Stsc151061g00042 245 Gene3D - 70 136 - -
Stsc151061g00042 245 MobiDBLite consensus disorder prediction 116 138 - -
Stsc151061g00042 245 CDD SANT 17 62 IPR001005 -
Stsc151061g00042 245 SMART sant 67 115 IPR001005 -
Stsc151061g00042 245 SMART sant 14 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151061g00042 Stsc-Chr151061 223245 224740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151061g00042 1 116 MYB Transcription Factor Family AT4G05100 66.379 1.56e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151061g00042 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151061g00042 K09422 - gmx:100802704 256.914