Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151061g00035 ATGCCGCACCCTTCATTCCACAAGCTTGTTCTTCCTTCTACCATTCAATCTAGGCAATTGAGGATTCCAGATACTTTCCTGAGTAGATATGGAGCTGACCTTTCTCCGATTGCTACCTTCTCGGTTCCTGATGGCAGCATTTGGCGTGTCAGATTTAAAAAGTTGGACAATGGATTTTGGTTTGTTGATGGTTGGCCAGAATTTGTTCAACGCTACTCCATCGGTGTTGGATACTTGTTAGTATTCAGATATGAAGGAAAGTCAAACTTCATTGTTCGTATCTTTAATTTGGCCACTTCCGAGATAAGTTATCAGTCACCCGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTTCGCTGAATATTCATCACCTTCCAGCCTTACTCCTGGTGCATTGCAAAATAAATACACCCCTGTGAAGAATTATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCTAAACTTAATAGCGTAAACTGGGGCGATAGTACAAACCCCCTTTCTTCAAGAAGTGCCAATTCGCTAGACGGTCGCTCGACCAGAGATATAGGTGTTCAGTTTAATGCAGTTGAGTTTAAAAGGTCTACCGATGAATTGAAGTTCCGCACTCCTGGAAGTTCTGTTGAGGAAAGGAAGAAAACTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACTCGTTGTGTATCAAGACGAGGAGGCAGAGATGCGGTTTAGATTCTATGAAAGTGCATCAGCAAGAAAAAGGACTGTGGCGGCAGAAGAAAGAGAAAGGGCCGTCAACGCAGCTAAAGCATTCGAACCACTTAATCCTTTCTGCCGTGTTGTCCTGCGGCCGTCATACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCGGAAAAGCATTTGAATGAGGTTTCAGGATTCATCAAACTTCAACTCTCCGACGGAAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTCGAGCTAAGCTGAGCCAGGGATGGTTTGAATTTGCGATAGAGAACAATCTTGGCGAGGGAGACGTCTGTGTGTTTGAGCTCCTTCCCACAAAGGAGGTGATAATGCTAGTTACATTGTTTCGCGTCACTGAGGATGACGGATTCTTCAGCCCTCCTCCTGTGCAACAGCCGAGCCAAAATCTTGTCAGCCAATCTAAAATGTTGAACGCGCACATGCGACCCAGCTCGGGTAAACTGATCAGGAGCTAA 1269 0.4484 MPHPSFHKLVLPSTIQSRQLRIPDTFLSRYGADLSPIATFSVPDGSIWRVRFKKLDNGFWFVDGWPEFVQRYSIGVGYLLVFRYEGKSNFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDFAEYSSPSSLTPGALQNKYTPVKNYTPPPLQNLFNGSKLNSVNWGDSTNPLSSRSANSLDGRSTRDIGVQFNAVEFKRSTDELKFRTPGSSVEERKKTPRKKRKSDGQELVVYQDEEAEMRFRFYESASARKRTVAAEERERAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPTKEVIMLVTLFRVTEDDGFFSPPPVQQPSQNLVSQSKMLNAHMRPSSGKLIRS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151061g00035 422 CDD B3_DNA 4 96 IPR003340 GO:0003677
Stsc151061g00035 422 Gene3D - 265 385 IPR015300 -
Stsc151061g00035 422 SMART B3_2 288 383 IPR003340 GO:0003677
Stsc151061g00035 422 SMART B3_2 6 98 IPR003340 GO:0003677
Stsc151061g00035 422 Gene3D - 1 98 IPR015300 -
Stsc151061g00035 422 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Stsc151061g00035 422 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Stsc151061g00035 422 Pfam B3 DNA binding domain 291 381 IPR003340 GO:0003677
Stsc151061g00035 422 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Stsc151061g00035 422 ProSiteProfiles B3 DNA-binding domain profile. 288 383 IPR003340 GO:0003677
Stsc151061g00035 422 PANTHER B3 DOMAIN-CONTAINING 3 372 - -
Stsc151061g00035 422 MobiDBLite consensus disorder prediction 216 240 - -
Stsc151061g00035 422 CDD B3_DNA 286 381 IPR003340 GO:0003677
Stsc151061g00035 422 SUPERFAMILY DNA-binding pseudobarrel domain 282 382 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151061g00035 Stsc-Chr151061 165029 168053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151061g00035 1 387 B3 DNA Binding Superfamily AT3G18990 50.636 2.89e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc151061g00035 B3 4.3e-16 CL0405