Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151061g00034 ATGAGCAATAGTAATAATAATGCAATTCTGATAGGCCCTTGTGGGGGTAAGTGGGAAGTGAGTATAATCAAGAAGAGAAGTAGAGAAAATAATGAAGTTTATTACTTTGAGCATGATGGTTGGTCAAGGTTTCTAGAAGAAAACCTGGTTCAACATGAGGATTTTTTGGATTTGACATATTATGGTGGAAATAGTAACCATTTCAAGGTCCAAATATTTTGTACAAGTGGATACAACAAAGCTGCAAGAATACTAAGAAGAAGGGCAATGGTATCATCAAACCCTTCTCAACAAGGTGAGGCTTGA 306 0.3627 MSNSNNNAILIGPCGGKWEVSIIKKRSRENNEVYYFEHDGWSRFLEENLVQHEDFLDLTYYGGNSNHFKVQIFCTSGYNKAARILRRRAMVSSNPSQQGEA 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151061g00034 101 CDD B3_DNA 6 74 IPR003340 GO:0003677
Stsc151061g00034 101 SUPERFAMILY DNA-binding pseudobarrel domain 6 77 IPR015300 -
Stsc151061g00034 101 Gene3D - 1 77 IPR015300 -
Stsc151061g00034 101 PANTHER B3 DOMAIN-CONTAINING 5 81 - -
Stsc151061g00034 101 Pfam B3 DNA binding domain 12 73 IPR003340 GO:0003677
Stsc151061g00034 101 ProSiteProfiles B3 DNA-binding domain profile. 1 76 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151061g00034 15 98 B3 DNA Binding Superfamily AT2G35310 30.952 2.46e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc151061g00034 B3 2.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151061g00034 - K10305 gmx:100809844 71.2478