Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151061g00033 ATGGCGAATACTACTCCAGCTAAGCAATTAAGCTTCTTCAAAGTGTTCCTTCCACAGTTCAGCTCTGAAAGATTGCCACTACCAAAAAATTATGTGGCATCGACAAGAATGAAAGAAAGGGTACCTGAGGAATTCAGATTGAGAAATGGAAGAGGAAGAGAATGGAGGGTGAAGACAAGTTGCATCGACGAGAAGGTGTATTTTGATGATGGATGGAAAAAGTTTGCCAGTGATAATGCTCTTCAAGCTGCTGTTTTCTTTCTTGTTTTCTATCTGGAAGATAGCAACACATTCATGTTCAAGATCTTTGAAGAATCATCGATGTGTGAAAAGACACAAATCAAGGAGGAAGAGGAGGAGGAAGCAATGGAGGACATAGAGATGAAGCAGGTGTTGGAGGCAGCAGCAACAGAAGAAGGTGAAGAAGAAGAAGATGATGATGATTATGATGATGAGGAGGAGAATGAAGAGATACATCATCATAGAGCTGGAAAAGCCCCTATTAAAAGCAAAAGGAGAAATAGTGCTGGAAGTTCTGTCAGCAAGAAGGGTGAAGACATTATTGCAAAGTATGGCAATCAACACAATCCATACTTTGTTCCCAAAATCAACAGAAACAGACCCAATGAACTGCAAATCCCAAATAAGCTCATTAAGGACTACTCCATTATCATCCCAGAAACTATCAAACTATGCTGCAAGAATATCAGAGTGATTTCGCCGGGGAAGACAACCATTGAGAGAAGTCATTGGCCTGATGTTACTGGAATAAGGAGTAAATGGTTAGATGGTAGAATTTGCATCTCAGAGTGGGGGAAATTTTGCAGAACTAACCATGTAGATACAAATGATGCTTTCATATGTGAACTGAAGATGAGGAATGACAGAAGAAATGTGAAAAACATACAGGTGTATGTTGTTAAGAAACAAGCTTAG 936 0.3964 MANTTPAKQLSFFKVFLPQFSSERLPLPKNYVASTRMKERVPEEFRLRNGRGREWRVKTSCIDEKVYFDDGWKKFASDNALQAAVFFLVFYLEDSNTFMFKIFEESSMCEKTQIKEEEEEEAMEDIEMKQVLEAAATEEGEEEEDDDDYDDEEENEEIHHHRAGKAPIKSKRRNSAGSSVSKKGEDIIAKYGNQHNPYFVPKINRNRPNELQIPNKLIKDYSIIIPETIKLCCKNIRVISPGKTTIERSHWPDVTGIRSKWLDGRICISEWGKFCRTNHVDTNDAFICELKMRNDRRNVKNIQVYVVKKQA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151061g00033 311 Gene3D - 4 109 IPR015300 -
Stsc151061g00033 311 Pfam B3 DNA binding domain 12 105 IPR003340 GO:0003677
Stsc151061g00033 311 Coils Coil 109 135 - -
Stsc151061g00033 311 MobiDBLite consensus disorder prediction 137 154 - -
Stsc151061g00033 311 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Stsc151061g00033 311 CDD B3_DNA 11 103 IPR003340 GO:0003677
Stsc151061g00033 311 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Stsc151061g00033 311 Gene3D - 181 310 IPR015300 -
Stsc151061g00033 311 SMART B3_2 12 106 IPR003340 GO:0003677
Stsc151061g00033 311 PANTHER B3 DOMAIN-CONTAINING 8 294 - -
Stsc151061g00033 311 MobiDBLite consensus disorder prediction 135 183 - -
Stsc151061g00033 311 SUPERFAMILY DNA-binding pseudobarrel domain 194 294 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151061g00033 Stsc-Chr151061 155231 156645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151061g00033 12 311 B3 DNA Binding Superfamily AT3G06160 24.545 2.78e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc151061g00033 B3 8.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151061g00033 - - ahf:112736814 328.946