Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151061g00018 ATGTACATGCAGATGCAACACCATCATCATCCTCATTCTTCTTCTTCTTCTCATCATTATTCCATACACCCTCCAACCCAATCTCCATCCCCATCCCCATCCCCCTCACCATCTCCATCTCCTTCTCTATTGACCAAGTCAACGCTACCACCACCTGCACCTTCTAAGTCTCCAGTAGACTTCAGCCCACCTCTCATAGCAATGGTTGTCGTCATCGCCGCCGCCTTCCTCCTCGTCACATACTCCCGTCTCATCGCCCGCCACCTCACTCCTCCCCTCCACCGTCTCATCCGCCGATTCCGCCGTCGCCGCCGCACCCATTCCTTCCTCCCCTCCTCCTCCGGCGACCTTGACTCCCTCCCTTACTACTACGACTCCCCATTCGACCCTCATCTCCCGCCCTCCTCCTTCTCCCCTTACGGCCTCGACGACTCCGTCATCAAAACCATCCCTTTCTCCCTTTACGCCGCCCTCTTAGCCGGCGAACTCAACAGCACCTCCTCTCGCCGTTCATCTTCACGCCGCGACTGCGCCGTTTGCCTCTTCGAATTCGAAGACGATGATTACGTCCGAACCTTGCCTCTTTGCTCCCACACCTTCCACGTTGATTGCATCGACGCTTGGCTTCGTTCCCACGCAAACTGCCCTCTCTGCCGCGCCGGAGTTCTCTCCGCCGCCTCCCCCTTCACTCCCATGTTCGCCGCCAGGATCCGACCAAGCCTCGACGACGACGCAATCTTCCACAGGATAACCGCGGAGAACACTCTCATGCCTCCGCCGGAGGATCATCGTCATTCTACGACGGCGGTTTCGGCGGTGACGGAGATTACCGTGGAAGTTCCCGAGGAGGGATTCAATGGAAGGGACTTTCTATTGAAGCGTTCTTATTCGTTTGGGTTTGAAAGGAGCTTGGCGTCGGAGAGGATGCTGGTCATGGAGCCGGCGACGGCGTCACCGTGGCGGTACCGGAGAGGAGCGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTATTGGGAAACCGAGAGTGTTCTCTTTCCGATACTACAGAGGGATGAAGTCACCGTTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGCGGCGGAAGTTCGTCGCGGCGGAGTAAGTCCATCGCCAGCCCCATGTTCTTAAGATCATCCGTACTGACCTCAGCAGCCGGCGCGGCGGGGTTTTCGTCGAACCGGCTGAGATGCGGCGATCCCGAGGCTCTGCTTTCGCCGGAGAGGTTCAACAGAAGAAACTAA 1299 0.5758 MYMQMQHHHHPHSSSSSHHYSIHPPTQSPSPSPSPSPSPSPSLLTKSTLPPPAPSKSPVDFSPPLIAMVVVIAAAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHLPPSSFSPYGLDDSVIKTIPFSLYAALLAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRITAENTLMPPPEDHRHSTTAVSAVTEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGASSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSAAGAAGFSSNRLRCGDPEALLSPERFNRRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151061g00018 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 223 IPR013083 -
Stsc151061g00018 432 SMART ring_2 177 218 IPR001841 -
Stsc151061g00018 432 PANTHER RING-H2 FINGER PROTEIN ATL16 48 244 IPR044600 GO:0016567|GO:0016740
Stsc151061g00018 432 Pfam Ring finger domain 176 219 IPR001841 -
Stsc151061g00018 432 SUPERFAMILY RING/U-box 176 225 - -
Stsc151061g00018 432 FunFam RING-H2 finger protein ATL65 135 223 - -
Stsc151061g00018 432 ProSiteProfiles Zinc finger RING-type profile. 177 219 IPR001841 -
Stsc151061g00018 432 MobiDBLite consensus disorder prediction 26 56 - -
Stsc151061g00018 432 CDD RING-H2_EL5-like 176 219 - -
Stsc151061g00018 432 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151061g00018 Stsc-Chr151061 69141 71223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151061g00018 55 432 C3H Transcription Factor Family AT3G18930 51.759 3.73e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151061g00018 - K19041 gmx:100795347 504.982