Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151061g00003 | ATGGAAGATTACGCTGCCAGCAGCGATGATGAATACCGTTACTCCGATCAGGAAGACTCCGTCGAAGCCTTAGATAACGACGACAACGATTATCAATTAGTCTCTTCCAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATCAGTGAGGGAGCAACATGCACGTGCCCTGCTTATTTTTCACCGTTGGGATGTGGAGAAGTTGTTTGCTGTGTTAGTGGACAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGTGACTCTAATTCGTCAGCTGCTCCTTCTACAATAATGTGCGAAATTTGCATTGAGGATGTTCCTAGCGAGGAAACAACAAAAATGGACTGTGGTCACTGTTTTTGCAACGGCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCACACAAATGTTATTCCATTTGCGATGAAGCTGTTGTCAGAACTCTTCTTAGCAAAAAGCACCCTGATATGGCGGAGAAATATGAACGCTTTCTCCTAGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGCCCTAGTACGCCTCATTGTGGGAATGCAATACGTGTCGAGGACGATGAATTATGTGAGGTAGAATGTTCATGTGGATTACAGTTTTGCTTTAGTTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCAAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACCAAGCCATGTCCAAAGTGCCACAAACCGGTTGAGAAAAACGGTGGTTGTAATTTGGTTAGCTGTATATGTGGTCAAGCATTTTGCTGTGGTCGCTATAAAGAGCAAGAAAAAACAGCTGAAAGGGCAAAGAGGGATCTATATCGCTATATGCATTATCATAATCGTTACAAAGCTCACACAGACTCCTTTAAGCTTGAGAGTAAACTGAAAGAAACTATACAAGAGAAGATTGCTGTCTCAGAAGAAAAGGATTCTACACTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCGTATGCATTTGCGTTTTACATGTTTGGTGACGAGCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACCTATTTGAGGATCAGCAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCCAAAATTTTAGAGGAGCCTTTTGAAACTTTTGAAGATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGAGCACTATTATTGACAAACTTTGCCAAAAAATCGTAGGTGTAACAGCAGAACACGATAGGCCTTCCGGATCAGGGAGCTCAGACGAGAGTGGATGCTCTTCTCGCAAGCGCGCTAGGAAAGAGGGCCTCGGAGGCGCGTTTTTTGATCTAAACTTGCCAGCAGAGTTGTAG | 1545 | 0.4252 | MEDYAASSDDEYRYSDQEDSVEALDNDDNDYQLVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARALLIFHRWDVEKLFAVLVDRGKHFLFSEAGVTVDEHRDSNSSAAPSTIMCEICIEDVPSEETTKMDCGHCFCNGCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQEKIAVSEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFEDDKVMEIRMQIINLSTIIDKLCQKIVGVTAEHDRPSGSGSSDESGCSSRKRARKEGLGGAFFDLNLPAEL | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151061g00003 | 514 | SUPERFAMILY | RING/U-box | 193 | 261 | - | - | |
| Stsc151061g00003 | 514 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 170 | IPR001841 | - | |
| Stsc151061g00003 | 514 | SMART | ibrneu5 | 263 | 308 | IPR002867 | GO:0008270 | |
| Stsc151061g00003 | 514 | SMART | ibrneu5 | 193 | 255 | IPR002867 | GO:0008270 | |
| Stsc151061g00003 | 514 | Pfam | IBR domain, a half RING-finger domain | 193 | 255 | IPR002867 | GO:0008270 | |
| Stsc151061g00003 | 514 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Stsc151061g00003 | 514 | ProSiteProfiles | TRIAD supradomain profile. | 118 | 336 | IPR044066 | - | |
| Stsc151061g00003 | 514 | FunFam | RBR-type E3 ubiquitin transferase | 116 | 207 | - | - | |
| Stsc151061g00003 | 514 | SUPERFAMILY | RING/U-box | 274 | 308 | - | - | |
| Stsc151061g00003 | 514 | CDD | BRcat_RBR_ANKIB1 | 200 | 264 | - | - | |
| Stsc151061g00003 | 514 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 208 | IPR013083 | - | |
| Stsc151061g00003 | 514 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 48 | 380 | IPR031127 | GO:0004842|GO:0016567 | |
| Stsc151061g00003 | 514 | SUPERFAMILY | RING/U-box | 118 | 205 | - | - | |
| Stsc151061g00003 | 514 | Pfam | Ariadne domain | 312 | 469 | IPR045840 | - | |
| Stsc151061g00003 | 514 | Pfam | Ariadne domain | 473 | 513 | IPR045840 | - | |
| Stsc151061g00003 | 514 | MobiDBLite | consensus disorder prediction | 475 | 495 | - | - | |
| Stsc151061g00003 | 514 | CDD | RING-HC_RBR_TRIAD1 | 121 | 171 | - | - | |
| Stsc151061g00003 | 514 | Gene3D | - | 251 | 478 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151061g00003 | Stsc-Chr151061 | 11318 | 14915 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151061g00003 | 61 | 469 | ARIADNE family | AT2G16090 | 70.602 | 0.0 | 631 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151061g00003 | K11968 | - | gmx:100783343 | 890.182 |