Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151060g00043 ATGCAGGGTATCTGGTTGATGTTATTCTTCTTGTTGGTGGCTATTGCATTAGGTAATTCAGACATTGATTCACTCCTTGAACTCAAGAAGAGTTTTCGGAACGATCCTAGCGGACTAGTTCTCGAATCGTGGAATTCTAAGTTCTTAGATTCTGATGGATGCCCTCAGAACTGGTATGGAATATTGTGTAGTGAGGGAAGTGTTATTTCAATTGTTTTGGACAATGCCGGGTTGGTCGGAGAGTTTAATTTCCCTGCAATTGGTGGCCTTAGAATGCTTCGAAACTTGTCTTTAGCGAATAACCAATTCACAGGAAGTATCTTGCAATTTGGTCAGATGGAATTTCTTGAATATCTTGATTTGTCCCTAAACAAGTTTAATGGATTGTTACCCTCGAACCTTGTCGAATTGCAGAGTTTAGTGTATCTGAATCTTTCTTCAAATGAATTTGAAGGTACTCTTCCTGTTGGGTTTTACAAACTTAGGAAGTTGAAGTATTTAGATTTGAACACTAATAACTTTTCTGGGGATATTATGCATATCTTTTCTCAGATGGGAAGTGTTGTGCATGTGGACTTAAGCCGCAACAGGTTTTCCGGGACACCGGATTTGGGACTCGGACCTGTGTCGTTTCTATCTTGGGTTAAACATTTAAATGTCAGCCACAATTCTTTGGTTGGTGAGCTTTTTGCTCATGATGGAATGCCTTACCTTGATAGTTTAGAGGTCTTTGATGCTAGTAATAATAAGTTAGAGGGTAACATACCTTCCTTCGCATTCGTGGTATCGCTGCGCATTCTTCGGCTTCAATGCAACCAATTGTCCGGTTCGCTGCCAGAAACTATGTTGAAAGAAAGTTCAATGTTATCTGAACTTGATCTGAGTCAAAACAAGATTGAAGGTCCAATTGGAAGTATCACTTCTGTCACACTGAGGAAGCTTAACATGTCTTCGAACAAATTGTCCGGTGCCTTGCCTCTCACGGTAGGCCACTGCATCATCATAGATTTGAGTAATAACATGCTGTCCGGTAATTTGTCGAGGATCCGGTATTGGGGTAACTATGTGGAAGTCATTCAGCTAAGTTCAAACTCATTGACAGGTACTCTCCCAAATGAAACTACTCAGTTCTTAAGGTTAACTGAACTTAAGGTATCTAATAACTCATTGGAGGGTGTTCTTTCGCCGATCTTGGGAACATATCCGGAGCTAAGAGAGATTGATCTTAGCCTCAACCTCCTTTCCGGGTTCCTCCTACCGAGCCTTTTCACCTCAACCAAGTTGACTAAGCTTAACCTTTCGAACAATAAGTTTTCTGGACCGATTCTTCAACAAGATCGAAATGATCCATCGGTTTCTTCTGAGAATTCTAGTATGATATATCTTGATCTTTCATACAACTACTTGAGTGGGGTTATACCTTCAAGCTTAAGCAAGCTTCACAATTTGACTTATCTCAATCTATGCAGCAACGAATTGGAAGGTACTATTCCTAATGACCTTCCGGCGTTGCGAGGCTTTAATGTGTCCTTCAATAATCTCTCTGGTGTTGTACCGGACAACTTAATGCAATTTCCAGAATCATCATTTCATCCGGGAAACTCTTTGCTGATTCTTCCGAAATCACAATCATCACCGGAAGTTGGTTCTAACTTCGGTTCGAGACAACATCAGTCACATAAAAAATCTGCAATCAGGATTGCCTTGATTGCAAGTTTAGTTACTGGTTTTGTGGTTATGGCCTTTGTTGGTATGTTGATTTATTACACGGTTCGCGGGCCAAAAGAAGGGACTTCAAAACAAAATGAAGCAAGAGGTATAGTCCAGAGTTCTTCATTATCAACCAGAGAAGAACCTAACAAAAATTTGGAAGCAATAGCATCTTCTCAGGGTGGATCAGCTGATGATGGAGGAAACATTGATGCATCGACAAAGAAGCCGAAAGATCTTGGCCAACCTGAACTATTTAAGAATGATGATGACATGCTTTCTCCGATGTCTTTCGTGTCAGCCTCGAACCCTTCATCTTCTATAAGTCCTCAGTTTGAGAATCCAGGCTCCCTCAATGTATCCTCTCCGGATAAACTAGGTGGGTACCTGAATCTATTTGATGGATCTTTGGTATTAACCGGTGAAGAACTTTCGAGTGCTCCGGCGGAAGTTATTGGTAAGAGTTGTCATGGAACACTATATAAAGCTACACTTGAGTCTGGTCATGAATTGGCTGTAAAATGGTTAAGGGAAGGCATCACTAAAGGGAAGAAGGAGTTTGCGAGGGAAGTTCGAAAACTCGGGACTATCAAGCATCCAAGTCTGGTTTCTATTCAGGGCTACTACTTGGGACCAAAGGAGCATGAGAGACTGATTATAACAAATTTTATTAATGCACATTCTTTGGACATTTATCTCCATGAGGCAGAGAAAAGAGATCTCCAACCTTTGTCGCTTGATGAAAGGCTGAGAGTGGCCGTGGAAGTCGCGCGGTGTCTGAATTATCTACACAATGAGAAGGCCATACCTCATGGCAATCTCAAATCCACAAACATTCTACTCGAAGCTCCAAACCGGAATGTCCAGCTGACCGACTACAGCCTGCACCGGATACTAACCGCTGCAGGCACGGCCGAGCAAGTCTTGAACTCCGGTGTTCTCGGTTACATGCCTCCCGAATTTGCCAGGTCATCAAGCAAACCATCCCCTTCATTAAAGAGTGATGTATATGCATTTGGAGTAGTCTTGTTAGAGCTCATTACAGGACAAAAATCAGGTGAAATATTGTCCGAGATTCCCGGAGCCGTAGATCTGACGGATTGGGTAAGGTTCTTAGCCAGCGAAAACCACCTTAATGAATGCTTTGATAGGTTTCTTGTGGAACAAGAAAGCAGTGAAAGACAAACAAGAATCCTTGATGAAATGCTTAAGGTTGCTCTAAGATGCACTCTTCCAGCATCAGAGAGGCCTGACATGGAAACAGTTTTTGATGATCTTTCATTAATAAGGTAG 3003 0.4186 MQGIWLMLFFLLVAIALGNSDIDSLLELKKSFRNDPSGLVLESWNSKFLDSDGCPQNWYGILCSEGSVISIVLDNAGLVGEFNFPAIGGLRMLRNLSLANNQFTGSILQFGQMEFLEYLDLSLNKFNGLLPSNLVELQSLVYLNLSSNEFEGTLPVGFYKLRKLKYLDLNTNNFSGDIMHIFSQMGSVVHVDLSRNRFSGTPDLGLGPVSFLSWVKHLNVSHNSLVGELFAHDGMPYLDSLEVFDASNNKLEGNIPSFAFVVSLRILRLQCNQLSGSLPETMLKESSMLSELDLSQNKIEGPIGSITSVTLRKLNMSSNKLSGALPLTVGHCIIIDLSNNMLSGNLSRIRYWGNYVEVIQLSSNSLTGTLPNETTQFLRLTELKVSNNSLEGVLSPILGTYPELREIDLSLNLLSGFLLPSLFTSTKLTKLNLSNNKFSGPILQQDRNDPSVSSENSSMIYLDLSYNYLSGVIPSSLSKLHNLTYLNLCSNELEGTIPNDLPALRGFNVSFNNLSGVVPDNLMQFPESSFHPGNSLLILPKSQSSPEVGSNFGSRQHQSHKKSAIRIALIASLVTGFVVMAFVGMLIYYTVRGPKEGTSKQNEARGIVQSSSLSTREEPNKNLEAIASSQGGSADDGGNIDASTKKPKDLGQPELFKNDDDMLSPMSFVSASNPSSSISPQFENPGSLNVSSPDKLGGYLNLFDGSLVLTGEELSSAPAEVIGKSCHGTLYKATLESGHELAVKWLREGITKGKKEFAREVRKLGTIKHPSLVSIQGYYLGPKEHERLIITNFINAHSLDIYLHEAEKRDLQPLSLDERLRVAVEVARCLNYLHNEKAIPHGNLKSTNILLEAPNRNVQLTDYSLHRILTAAGTAEQVLNSGVLGYMPPEFARSSSKPSPSLKSDVYAFGVVLLELITGQKSGEILSEIPGAVDLTDWVRFLASENHLNECFDRFLVEQESSERQTRILDEMLKVALRCTLPASERPDMETVFDDLSLIR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151060g00043 1000 MobiDBLite consensus disorder prediction 602 637 - -
Stsc151060g00043 1000 PANTHER OS07G0626500 PROTEIN 6 999 - -
Stsc151060g00043 1000 Pfam Leucine rich repeat 451 493 IPR001611 GO:0005515
Stsc151060g00043 1000 Pfam Leucine Rich repeat 425 442 IPR001611 GO:0005515
Stsc151060g00043 1000 SUPERFAMILY Protein kinase-like (PK-like) 720 996 IPR011009 -
Stsc151060g00043 1000 Gene3D Transferase(Phosphotransferase) domain 1 795 1000 - -
Stsc151060g00043 1000 Gene3D Phosphorylase Kinase; domain 1 715 793 - -
Stsc151060g00043 1000 ProSiteProfiles Protein kinase domain profile. 716 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00043 1000 Gene3D Ribonuclease Inhibitor 183 547 IPR032675 -
Stsc151060g00043 1000 MobiDBLite consensus disorder prediction 641 656 - -
Stsc151060g00043 1000 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 260 546 - -
Stsc151060g00043 1000 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 19 229 - -
Stsc151060g00043 1000 SUPERFAMILY L domain-like 236 515 - -
Stsc151060g00043 1000 SUPERFAMILY L domain-like 42 331 - -
Stsc151060g00043 1000 Pfam Leucine rich repeat N-terminal domain 19 64 IPR013210 -
Stsc151060g00043 1000 Pfam Protein tyrosine and serine/threonine kinase 720 994 IPR001245 GO:0004672|GO:0006468
Stsc151060g00043 1000 MobiDBLite consensus disorder prediction 595 657 - -
Stsc151060g00043 1000 Gene3D Ribonuclease Inhibitor 20 182 IPR032675 -
Stsc151060g00043 1000 FunFam Leucine-rich repeat receptor-like protein kinase 701 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151060g00043 Stsc-Chr151060 219813 223130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151060g00043 70 999 Receptor kinase-like Gene Family AT5G07280 30.208 2.11e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc151060g00043 PK_Tyr_Ser-Thr 2.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151060g00043 - - ccaj:109792420 1427.54