Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151060g00005 ATGAGTGTCATCACAATCCTCTTGTTGATTCTATCCTTCTTTGCCTTATTATTATTACCTTCTGCTTCTGGTCTTGTCTCTGATGGGATAACTCTGCTGTCATTGTTGTCACACTGGACCTTTGTTCCTCCCATTATCAACTCCACCTGGAATCCATCTGATTCTGCTCCATGCTCTTGGGTTGGAGTAAAATGTAACCATGCCCACAATGTAATCTTCCTTAACCTCACTGATCATGGGATTCTCGGTCAACTTGGACCCGAGATTCCACAATTGCATCACTTGCAGACTCTTGTGTTGGCCAATAATGGTTTCTCAGGAAAAGTACCTTCAGAGGTAAGTAATTGTAGCTTGCTTCAGCATCTAGACCTTGCTAATAACAGCTTCAGTGGACAGATACCATTTGCCTTCAACAAGTTGCAAAATCTCCGATTTATGAGCTTATCATTCAATCTGTTGAGTGGTGAGATTCCAGATTCCTTGTTTCAAATTACTCAACTGCAAGAAGTGAACCTTCACTCTAACCATCTCAGTGGTCCTATCCCAACCAGAATAGGCAACTTGACTCAGCTGTTGAGGTTGGATCTACATGGTAATGGCTTGACAGGTACTATTCCTTCATCCATTGGAAATTGCAGCAAATTAGAGGATTTTGTTTTGAATGAGAACAAACTCAAAGGAGAACTACCATTGGAGATGGCTAAGCTCAAGCATCTGAAAAATATCTTACTGTTTGACAATCAATTATCTGGATTCATACCTCAAAGCTTGGGAATCAATAGCAGCCTAGTGAAGCTGGATCTTACAATGAATGAGTTCACTGGTAATATCCCACTCAATCTCTGCCTTGGGAAGCAACTAGGTGTGCTGAACTTGGGATCTAATCAACTTCAAGGTATCATACCTTCTGATATAGGAAGATGTAAAACTCTAAGCATGTTAATTCTTAGTGAAAATCATTTGACCGGTTCTCTTCCAGAGTTTGCGAGTAACCTGAACCTCAAGATCATGGACATAAGCAGGAACAGAATTAGTGGAACTATACCATCAAGTTTGGGGAAGTGCACAAATCTTATTGAAATAAATTTGTCAATGAACAAATTTACTGGCCTCATTCCACCGCAGCTTGGAAAGCTTGTGAATCTTGAGGTTTTGAATCTTGCACATAACAGCTTGGAAGGGGGTATCCCAACCTTTCTTTCAGAATATAACAAGCTTCATGAGTTACAGCTTGGTGGAAATTTGTTTGGAGGAAAAATTCCTCCATCATTAGGAAAACTGCAGAATCTGTTCTACCGATTGAATCTGAGTGCTAATGGATTGACAGGGGAAATTCCATTTGAAATTGGGAAGCTAAAAGTACTGTCTATTCTAGATTTATCCTCAAACAATTTGACAGGAAGCATAGATGTTCTTGGTGAACTTTCATTGATCAACTTGAATGTTTCCTACAATTTCTTGTATGGTCCTGTACCAGAAACTCTGATGAAGTTCTTAAATTCTTCGCCGTCTTCATTCTTGGGCAATCCCTATCTATGTGTCAGTTTTTCACCTTCTCATAGCTCAAATTCCACTCAAGCTAGTTACTTGAAGCCATGTGTCTACAAATCAACTCCTCATTTAGGCATCAGTATAAGTGCTGTGGTGATGATAGAACTTGGTTCTGCAATATTCATTTCTGCCTTGCTGGTAGCACTAGTTGTCCGCCGGTTAAATGCCTCCGGTTCAATGCTTTCTCATGTTGAAAATGACCATGGAGATATATTCGGAATCGGAGCCTGGCACAAGCTTAAGATCCATGATCTAATGAACAAAGTAGATGATGGGTGTATTATTGGCAGAGGAGCCCATGGAATAGTTTATAAAGTCGAGCTTCCTAGTGGTCAAACTGTTGCAGCAAAGAAGAGTGTATTTAGAGGAGAAGGCAACAAGCGCTTAAAAAACATGGAAACAGAAATTGAAACCCTTACTAAGACTAGGCACCGAAATTTGTTAAAAGTATATGGGTTCGCATTGGCTAAGGACTACGGGGTATTGCTTACTTCCTACATGGAAAATGGAAGCCTTCATGATATTTTGCATAAGAACATTCCACCACCAGCCTTAAGCTGGAACGTTCGGTTTAAGATAGCTGATGGAATTGCACAGGGACTAAAATACCTGCATTATGACTACGATCCGCCGATAGTGCACCGAGACATCAAACCACAGAATATACTCCTTGATTCTGACATGGTGCCTCATATTTCTGATTTTGGTATTGCCAACATCAGGAACCTAGCTGAGGACTCTTATACTCGTTCTGATTTCCCTTGGCAAAAGCTTTCAGCACATGTAGCTGGTACTCCTGGCTATATGGCACCAGAATGTGCATATGCAGAAGTGCCAAGCAGAAGTTTTGATGTATATAGCTATGGAGTAGTGTTGCTTGAGCTAATAACCAGAAAGAGTGTTAGTTGA 2460 0.4053 MSVITILLLILSFFALLLLPSASGLVSDGITLLSLLSHWTFVPPIINSTWNPSDSAPCSWVGVKCNHAHNVIFLNLTDHGILGQLGPEIPQLHHLQTLVLANNGFSGKVPSEVSNCSLLQHLDLANNSFSGQIPFAFNKLQNLRFMSLSFNLLSGEIPDSLFQITQLQEVNLHSNHLSGPIPTRIGNLTQLLRLDLHGNGLTGTIPSSIGNCSKLEDFVLNENKLKGELPLEMAKLKHLKNILLFDNQLSGFIPQSLGINSSLVKLDLTMNEFTGNIPLNLCLGKQLGVLNLGSNQLQGIIPSDIGRCKTLSMLILSENHLTGSLPEFASNLNLKIMDISRNRISGTIPSSLGKCTNLIEINLSMNKFTGLIPPQLGKLVNLEVLNLAHNSLEGGIPTFLSEYNKLHELQLGGNLFGGKIPPSLGKLQNLFYRLNLSANGLTGEIPFEIGKLKVLSILDLSSNNLTGSIDVLGELSLINLNVSYNFLYGPVPETLMKFLNSSPSSFLGNPYLCVSFSPSHSSNSTQASYLKPCVYKSTPHLGISISAVVMIELGSAIFISALLVALVVRRLNASGSMLSHVENDHGDIFGIGAWHKLKIHDLMNKVDDGCIIGRGAHGIVYKVELPSGQTVAAKKSVFRGEGNKRLKNMETEIETLTKTRHRNLLKVYGFALAKDYGVLLTSYMENGSLHDILHKNIPPPALSWNVRFKIADGIAQGLKYLHYDYDPPIVHRDIKPQNILLDSDMVPHISDFGIANIRNLAEDSYTRSDFPWQKLSAHVAGTPGYMAPECAYAEVPSRSFDVYSYGVVLLELITRKSVS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151060g00005 819 SMART serkin_6 606 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00005 819 FunFam Leucine-rich repeat receptor-like protein kinase TDR 211 524 - -
Stsc151060g00005 819 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Stsc151060g00005 819 FunFam Os07g0541700 protein 684 769 - -
Stsc151060g00005 819 ProSitePatterns Protein kinases ATP-binding region signature. 612 635 IPR017441 GO:0005524
Stsc151060g00005 819 Gene3D Ribonuclease Inhibitor 188 261 IPR032675 -
Stsc151060g00005 819 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 286 817 - -
Stsc151060g00005 819 ProSiteProfiles Leucine-rich repeat profile. 454 476 IPR001611 GO:0005515
Stsc151060g00005 819 SMART LRR_typ_2 379 403 IPR003591 -
Stsc151060g00005 819 SMART LRR_typ_2 92 116 IPR003591 -
Stsc151060g00005 819 SMART LRR_typ_2 140 164 IPR003591 -
Stsc151060g00005 819 SMART LRR_typ_2 452 475 IPR003591 -
Stsc151060g00005 819 SMART LRR_typ_2 188 212 IPR003591 -
Stsc151060g00005 819 Pfam Leucine rich repeat 333 392 IPR001611 GO:0005515
Stsc151060g00005 819 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Stsc151060g00005 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Stsc151060g00005 819 SUPERFAMILY Protein kinase-like (PK-like) 596 817 IPR011009 -
Stsc151060g00005 819 FunFam Leucine-rich repeat receptor-like protein kinase 27 183 - -
Stsc151060g00005 819 Gene3D Ribonuclease Inhibitor 262 529 IPR032675 -
Stsc151060g00005 819 Gene3D Transferase(Phosphotransferase) domain 1 595 818 - -
Stsc151060g00005 819 ProSiteProfiles Protein kinase domain profile. 606 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00005 819 SUPERFAMILY L domain-like 28 326 - -
Stsc151060g00005 819 Pfam Protein kinase domain 611 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00005 819 SUPERFAMILY L domain-like 285 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151060g00005 Stsc-Chr151060 29334 32810 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151060g00005 90 816 Receptor kinase-like Gene Family AT1G73080 43.350 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151060g00005 Pkinase 3.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151060g00005 - - adu:107496784 1178.31