Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151060g00003 ATGAGTAATATCACACTCATGTTGTTGATTCTTTGTTTCTCTGCCTTCTTGTATGATGCTTCCGCTCTTAACTCCGATGGTGCCACCCTCCTTTCACTCTTGACTCATTGGACCTTTGTTCCTCCCATCATAAACTCCACCTGGAATGCCTCTCATTCCGTTCCATGCTCGTGGCATGGAGTCCAATGCAGCCATGCTTACCATGTCAAGTCTCTTAACCTCACTGATCTTGGGATTCATGGTCAACTTGGACCAGAAATTGGACAATTATATCGCTTGAAGATCCTTGTGTTGTCCAATAACGGTTTCTCAGGAAAGGTGCCTTCAGAGCTAAGTAACTGTAGTTTGCTCGAGCTTTTAGACCTTTCTAATAACATGTTCAATTGGGAACTACCATTGGAGATGGAGAACCTCAAGAATCTAAAGAATATTTCCTTGTTCAGCAACCAATTCTCAGGAGTTATTCCTCAGAATTTGGGAATCAATAGCAGCTTGGTGAAGTTGGACTTCACAAATAACAAGTTCACTGGTAAGCTTCCTCCAAATCTCTGCTTTCGAAAGCGATTGCGAGTGCTAAACATGGGATCTAATCAACTTCATGGTAGCATACCTTCTGATTTGGGAAGATGTCCAACTCTAGTTATGTTGATTCTCAGTGAAAATAATTTCACTGGGTCTCTTCCTGTTTTTGAGAGTAATGTGAACCTCAAATACTTACACATAAGCAAAAACAAGATCAGTGGACCAATTCCACCAAGTCTGGAAAATTTTACAAATCTTGCTGCAATTAACATGTCAATCAACAACTTTACTGGGCTCATACCATCTGCACTTGGAAAGCTTGTGAATCTTACAATTTTGGATCTTTCACACAACAATTTGGAAGGACCTTTGCCACCACAGCTTTCAAATTGTACTAAAATGGATCATTTTGATGTTGGATTCAATTCCCTAAACGGTTCATTCCCACCAAGTCTTAGGAACTGGACAGAGATAACCACATTAGTTTTAAGAGACAATCATTTTACAGGTGGTATCCCGGGCTTTTTCTCAGAATTTAGCAAGCTTCGTGAACTACAACTTGGTGGAAATTTGATTGGAGGAGCAATTCCTCCATCATTGGGAAAGCTGAAGAATCTGTTCTATGGGTTGAATTTGAGTAGCAATGGATTGACAGGTGTAATTCCTATAGAACTTGGGTATCTACAAGAACTGCAAAGTCTGGACTTATCACTGAACAAGTTGACAGGAAACATACATGCTCTTGATAATCTACTTTCATTGATTGAGATCAATGTCTCCTACAATTTTTTCTCTGGACCTTTGCCAGAGGGTCTGTTCAAGTTCTTGAGTTTCTCTCCATCTTCATTCTTGGGAAATCATGATCTATGCGCCAACTGTTCGATGAATTGCTCCAACACCAGCCATTTGAAGCAATGTAGACTTGACAAGAAAAAGAATCACTCAGGCTTCAGTACAATTGAAATTGTTATGATTATGCTCAGTTCCTCAATCTTTGTTTCAGCACTTCTTCTCGTTTACTTCCACTGCAGATCGAGGCAAGAGAAGTGGTATGATATTCAAAGTGAAGTACCAAGGGCTGAGATTACAGTATTAGAACGTGAACCAGCAATCAGGGCAAATCACATCCTTGAGAAAAAATTGAAGACATACACCAAGAAAGAGCTATCTTGCATTCATGACATAGTTATGGAAGCTACAGAGAATCTAAACCATCGGTATATTATAGGCCAAGGAGCACATGGAGTTGTGTATAAAGTCCAGCACCCGAATCTAACTTGTGCAGCAAAGAAGATTGCTTTCGGAGGGAAGAACGAGAAGAGATTTATAACCATGCGGACAGAAATTGAAACACTTAAGTTGATTAGGCATCGAAATTTGGTTGAGTACAAAGCATGCTTGCTTGCTGAAAACTACGGTTTAATCCTATGTGACTACATGGAAAATGGATGCCTTCATGATATTTTGCATGGGATGAATCCCTCCCTTTGGCCATTAAAGTGGGACTTACGGCTCGCCATAGCCTGTGGAATTGCGAAAGGGCTGAGATATCTGCATCATGATTGCAACCCACCAATTGTGCATAGAGATATCAAGCCAAAAAATATACTTCTTGATGCTACGCTGGAGCCTCATATAGCTGATTTTGGCATTGCATTTGTGAGGAACCTGGGTCAGCATAAGGTTTCAGCTTATCTAAAGGGTACCATTGGATACATTGCACCAGAATGTGCTTATTCGGTAGTGCCAAGCACAAAGTGGGATGTATATAGCTATGGTGTGGTTCTGCTTGAGCTTATAACAAGGAAGAAAGCAGTGATTCAAGATGAAGAAGATAATGCCACCGGTTTAGTGAGTTGGGTTAGATCTATATGGGTGGAAACTAACAGAATTGATGAGATCGTTGATTCAGAACTTGTAAGAGCATTTCCATATTCAGCAGAGTTGGCAAAGCAAGTCATGGAGCTGTTCTTGTTGGCATTAAGTTGCACTGAGAGGGATCCACGTAATAGACCAACCATGAAAGATGTTATCGTTGGTTTGTTTCAGAAAGGCATGCTCAGGTGGAGTTGTAAACCTGTGTTATTGGATGATCCAGTTAGTGTAGTCCATTAA 2637 0.4054 MSNITLMLLILCFSAFLYDASALNSDGATLLSLLTHWTFVPPIINSTWNASHSVPCSWHGVQCSHAYHVKSLNLTDLGIHGQLGPEIGQLYRLKILVLSNNGFSGKVPSELSNCSLLELLDLSNNMFNWELPLEMENLKNLKNISLFSNQFSGVIPQNLGINSSLVKLDFTNNKFTGKLPPNLCFRKRLRVLNMGSNQLHGSIPSDLGRCPTLVMLILSENNFTGSLPVFESNVNLKYLHISKNKISGPIPPSLENFTNLAAINMSINNFTGLIPSALGKLVNLTILDLSHNNLEGPLPPQLSNCTKMDHFDVGFNSLNGSFPPSLRNWTEITTLVLRDNHFTGGIPGFFSEFSKLRELQLGGNLIGGAIPPSLGKLKNLFYGLNLSSNGLTGVIPIELGYLQELQSLDLSLNKLTGNIHALDNLLSLIEINVSYNFFSGPLPEGLFKFLSFSPSSFLGNHDLCANCSMNCSNTSHLKQCRLDKKKNHSGFSTIEIVMIMLSSSIFVSALLLVYFHCRSRQEKWYDIQSEVPRAEITVLEREPAIRANHILEKKLKTYTKKELSCIHDIVMEATENLNHRYIIGQGAHGVVYKVQHPNLTCAAKKIAFGGKNEKRFITMRTEIETLKLIRHRNLVEYKACLLAENYGLILCDYMENGCLHDILHGMNPSLWPLKWDLRLAIACGIAKGLRYLHHDCNPPIVHRDIKPKNILLDATLEPHIADFGIAFVRNLGQHKVSAYLKGTIGYIAPECAYSVVPSTKWDVYSYGVVLLELITRKKAVIQDEEDNATGLVSWVRSIWVETNRIDEIVDSELVRAFPYSAELAKQVMELFLLALSCTERDPRNRPTMKDVIVGLFQKGMLRWSCKPVLLDDPVSVVH 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151060g00003 878 FunFam Nuclear pore complex protein NUP107 23 181 - -
Stsc151060g00003 878 SMART serkin_6 577 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00003 878 Gene3D Ribonuclease Inhibitor 27 134 IPR032675 -
Stsc151060g00003 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Stsc151060g00003 878 ProSiteProfiles Leucine-rich repeat profile. 404 426 IPR001611 GO:0005515
Stsc151060g00003 878 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515
Stsc151060g00003 878 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
Stsc151060g00003 878 SUPERFAMILY L domain-like 47 264 - -
Stsc151060g00003 878 Gene3D Transferase(Phosphotransferase) domain 1 654 862 - -
Stsc151060g00003 878 Gene3D Ribonuclease Inhibitor 135 232 IPR032675 -
Stsc151060g00003 878 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Stsc151060g00003 878 PANTHER LEUCINE RICH REPEAT KINASE 2 135 853 - -
Stsc151060g00003 878 SMART LRR_sd22_2 233 259 - -
Stsc151060g00003 878 SMART LRR_sd22_2 402 427 - -
Stsc151060g00003 878 SMART LRR_sd22_2 281 307 - -
Stsc151060g00003 878 SUPERFAMILY L domain-like 188 468 - -
Stsc151060g00003 878 SMART LRR_typ_2 187 210 IPR003591 -
Stsc151060g00003 878 SMART LRR_typ_2 90 114 IPR003591 -
Stsc151060g00003 878 SMART LRR_typ_2 353 377 IPR003591 -
Stsc151060g00003 878 SMART LRR_typ_2 281 305 IPR003591 -
Stsc151060g00003 878 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 187 473 - -
Stsc151060g00003 878 Pfam Protein kinase domain 582 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151060g00003 878 SUPERFAMILY Protein kinase-like (PK-like) 567 856 IPR011009 -
Stsc151060g00003 878 Gene3D Phosphorylase Kinase; domain 1 565 653 - -
Stsc151060g00003 878 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 654 860 - -
Stsc151060g00003 878 PRINTS Leucine-rich repeat signature 402 415 - -
Stsc151060g00003 878 PRINTS Leucine-rich repeat signature 284 297 - -
Stsc151060g00003 878 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Stsc151060g00003 878 Gene3D Ribonuclease Inhibitor 233 475 IPR032675 -
Stsc151060g00003 878 Pfam Leucine rich repeat 331 391 IPR001611 GO:0005515
Stsc151060g00003 878 ProSiteProfiles Protein kinase domain profile. 577 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151060g00003 Stsc-Chr151060 13707 16636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151060g00003 72 865 Receptor kinase-like Gene Family AT1G73080 45.533 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151060g00003 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151060g00003 - - adu:107496784 961.829