Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151059g00047 ATGGCTCTGTTTTCTCAAGTGCTACTTCATTTCCCCTTAATAATAATCACCCTCCTTCATCACCATTTGGTTGGTGTATCATCCACCACCCTAAGCATCTCCACAGATAAAGAAACCTTGATCACAGTCAAGTCTCAGTTTAGTGATGAGACTTCCAATAAACTATCTTCTTGGAGCCAGAACTCATCCCCATGCAGCAATTGGACTGGTGTCAAGTGTAACAAGCTAGGCCAGAGAGTAACTAGCCTTGATCTTTCAGGTTTAGGGCTCTCAGGTCACTTGAGCCCTTACATTGGCAACCTCTCCTTTCTTAAGTCCCTACAATTGCAGGATAACCAACTCACAGGAGTGATTCCGGATCAGATATCAAGTCTATTCCGTTTAAGAGTTCTTAACATGAGCTCTAATTCTATTGAAGGAGTGATTCCTTCAAACATCACCCTCTTGACTGAGCTCCAGATTCTTGATTTATCATCAAACAAGATAGTGAGCAGAATTCCTCAAGACATGGGAAACTTGATGAGAAATCTTCAGGTCTTGAAGTTGGGTAAGAATAGCCTTCATGGTGCAATTCCAGCTTCTCTGGGAAACATTTCTTCCCTCAGGAATATCAGTCTTGGCACCAATTATTTCAGTGGCTGGATTCCCAGTGACTTGGGAAGGCTCAAGAATTTGGTGGAGCTTGATCTCACTATCAACAATCTCACTGGGACTGTTCCACCAGTTATATATAACTTAACCTCCCTTGTTAACTTGGCCTTGGCTGCAAATTCCTTTTGGGGTGAGCTTCCTCAAGATGTTGGTCATACACTTCCAAATCTCCTAGTGTTCAACTTCTGCTTCAACAGATTCACCGGTGGAATTCCAGCTTCTTTGCACAATCTCACTGACATTAGAGTCATCCGTATGGCTCACAACCTCTTGGAAGGGACAGTGCCACCTGGGTTAGGAAATTTGCCATCCTTGCGCATGTATAACATTGGATACAACAAGATAGTTAGCTCTCCAGGAAGAGATCTGGATTATATTATTGATTCTTTGACAAACAGCACCAATCTCAACTTTCTTGCCATTGATGGCAATAGGTTTGAAGGTGTAATTCCTGAAGCCATTGGCAATCTCTCCAAGAATCTCTCAATATTGTACATGGGAGGGAATAGAATCAATGGAAGCATACCTTCTTCCGTTGGCCGTCTTAGCGGGATGAGATTGTTAAACTTGAGCTACAATTTGATCACTGGAGAAATCCCACAGGAGTTAGGCCAATTAGAGAATCTACAAGAGCTAATTCTAGCTGGAAATCAGCTATCAAGTAGTATTCCAAAGTCTCTTGGCAATCTCATAAACTTAAACCAGATTGACATGTCAAGAAATGAACTTGTGGGTGCAATACCGACTAGTTTTGGTAACTTTCAAAGCCTTCTATCTATGGACTTATCCAGCAACAAACTCAGTGGAGACATACCTAGGGAGATACTCAATCTCCAAAGTTTGAGCAAGGTTTTAAATCTGTCAATGAACCTCTTGAGTGGACCAATACCTCAAGTTGGGAATTTGATTAGTGTTGCCACCATAGACTTTTCTATCAACAAATTGTATGGTGAGATTCCCAGCTCATTCAGCAATTGTCTGAGCTTGGAAAAATTGTCTCTGGCAAAGAATATGCTTTCGGGTCCCATTCCGAATGCTCTTGGGGATGTGAAAGGTTTGGGAACTTTGGACCTGTCCTGCAACCAACTCTCAGGATCCATCCCTATTGAACTTCAAAATCTACATGCCCTTCAGCTTTTGAACCTCTCTTATAATGATTTAGATGGAGCCATTCCTAGTGGTGGAGTATTCCAAAATCTCTCTGCTGTCCATTTAGAAGGTAACACAAAACTCTGCTTGCATTTCTCATGTGTACCTCGTGGCCATGAAAGGAGGACTGTATACATCATCATAGCCGTGGTAGTGTCATTGATACTATGTCTCACAATTGGCCTGCTACTATACATGAAGAACAGAAGAGTGAAGGTAACATCGGCAGCAGCATCTGAACTTTTAAAGCCTCATGCTCCAATGATCTCTTATGATGAGCTTCGTCAGGCGACTGACGAGTTCAGCCAGGAAAATTTAATAGGATCTGGGAGCTTCGGCTCAGTGTATCGAGGCCTTCTAAGCCAGGGAAATACTGTTGCTGTGAAAGTGCTTAACATTCTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCTGAGTGCGAGGCTATGAGAAACTCAAGGCACAGAAATCTGGTTAAGGTGATCACATCTTGCTCTAGTGTTGACTTCAAGAACAACGAATTTCTGGCTTTGGTTTATGAGTACATGAGCAATGGGAGCTTAGATGACTGGATTAAGGGGAAGAGAAAGCATGCAAATGGAAATGGTTTGAAGCTTATGGAGAGACTGAATATAGCTATTGACACAGCTTGTGCATTGGATTACCTGCACAATGATAGTGAAATTCCTATCGTGCATTGTGATTTGAAGCCTAGCAACATTCTCTTGGATGCTGACATGACTGCCAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTGATTGAAAGATCAACAAATAATCAAGTCTCCATTAGCTCCACTCATGTCCTTAAGGGTTCAATTGGTTACATTCCACCAGAGTATGGATGGGGAGAGAAACCATCTTCAGCTGGAGATGTGTACAGTTTCGGGATAGTGTTACTTGAGCTGTTCTCTGGGAAGAGCCCAACAGATGAGTGCTTTGCAGGTGGCCTAAGCCTAACAAGATGGGTGCAATCAGCATACAAAGTCAAGAATTTGGAAGTCATTGACCCTCAGCTGCTCTCCCTCATCTCTGATGATGATCATGATCTTGCTGAAGGTCCAAATCCACAACTCTATTGTCTGGATGGAATTCTTGGAGTTGGTCTGTCCTGTGCTGCAGGCACACCAGATGCAAGGATTGGCATTCGAGAAGCTGTTCGCCAACTAAAAGCAGTTAGAGACTCTCTTTTGAAGAACAATGATAGTAAGAGTGCTGCACCTACTAGCAAGCATTACTACCAAGTTTCAACAAAATGA 3078 0.4259 MALFSQVLLHFPLIIITLLHHHLVGVSSTTLSISTDKETLITVKSQFSDETSNKLSSWSQNSSPCSNWTGVKCNKLGQRVTSLDLSGLGLSGHLSPYIGNLSFLKSLQLQDNQLTGVIPDQISSLFRLRVLNMSSNSIEGVIPSNITLLTELQILDLSSNKIVSRIPQDMGNLMRNLQVLKLGKNSLHGAIPASLGNISSLRNISLGTNYFSGWIPSDLGRLKNLVELDLTINNLTGTVPPVIYNLTSLVNLALAANSFWGELPQDVGHTLPNLLVFNFCFNRFTGGIPASLHNLTDIRVIRMAHNLLEGTVPPGLGNLPSLRMYNIGYNKIVSSPGRDLDYIIDSLTNSTNLNFLAIDGNRFEGVIPEAIGNLSKNLSILYMGGNRINGSIPSSVGRLSGMRLLNLSYNLITGEIPQELGQLENLQELILAGNQLSSSIPKSLGNLINLNQIDMSRNELVGAIPTSFGNFQSLLSMDLSSNKLSGDIPREILNLQSLSKVLNLSMNLLSGPIPQVGNLISVATIDFSINKLYGEIPSSFSNCLSLEKLSLAKNMLSGPIPNALGDVKGLGTLDLSCNQLSGSIPIELQNLHALQLLNLSYNDLDGAIPSGGVFQNLSAVHLEGNTKLCLHFSCVPRGHERRTVYIIIAVVVSLILCLTIGLLLYMKNRRVKVTSAAASELLKPHAPMISYDELRQATDEFSQENLIGSGSFGSVYRGLLSQGNTVAVKVLNILRTGSLKSFFAECEAMRNSRHRNLVKVITSCSSVDFKNNEFLALVYEYMSNGSLDDWIKGKRKHANGNGLKLMERLNIAIDTACALDYLHNDSEIPIVHCDLKPSNILLDADMTAKVGDFGLARLLIERSTNNQVSISSTHVLKGSIGYIPPEYGWGEKPSSAGDVYSFGIVLLELFSGKSPTDECFAGGLSLTRWVQSAYKVKNLEVIDPQLLSLISDDDHDLAEGPNPQLYCLDGILGVGLSCAAGTPDARIGIREAVRQLKAVRDSLLKNNDSKSAAPTSKHYYQVSTK 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151059g00047 1025 SMART LRR_sd22_2 222 248 - -
Stsc151059g00047 1025 SMART LRR_sd22_2 149 179 - -
Stsc151059g00047 1025 SMART LRR_sd22_2 423 444 - -
Stsc151059g00047 1025 SMART LRR_sd22_2 375 401 - -
Stsc151059g00047 1025 Gene3D Ribonuclease Inhibitor 340 634 IPR032675 -
Stsc151059g00047 1025 SMART serkin_6 701 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151059g00047 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 672 781 - -
Stsc151059g00047 1025 Gene3D Phosphorylase Kinase; domain 1 682 781 - -
Stsc151059g00047 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Stsc151059g00047 1025 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Stsc151059g00047 1025 CDD STKc_IRAK 707 997 - -
Stsc151059g00047 1025 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Stsc151059g00047 1025 FunFam Leucine-rich repeat receptor-like protein kinase 33 175 - -
Stsc151059g00047 1025 Pfam Protein kinase domain 702 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151059g00047 1025 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Stsc151059g00047 1025 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 636 - -
Stsc151059g00047 1025 SMART LRR_typ_2 471 495 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 423 447 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 222 246 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 591 616 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 149 173 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 101 125 IPR003591 -
Stsc151059g00047 1025 SMART LRR_typ_2 174 198 IPR003591 -
Stsc151059g00047 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 782 1009 - -
Stsc151059g00047 1025 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 232 338 - -
Stsc151059g00047 1025 SUPERFAMILY L domain-like 341 629 - -
Stsc151059g00047 1025 ProSiteProfiles Protein kinase domain profile. 701 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151059g00047 1025 Gene3D Ribonuclease Inhibitor 194 339 IPR032675 -
Stsc151059g00047 1025 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Stsc151059g00047 1025 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Stsc151059g00047 1025 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Stsc151059g00047 1025 PANTHER UNNAMED PRODUCT 344 917 - -
Stsc151059g00047 1025 Gene3D Transferase(Phosphotransferase) domain 1 782 1020 - -
Stsc151059g00047 1025 SUPERFAMILY L domain-like 36 333 - -
Stsc151059g00047 1025 SUPERFAMILY Protein kinase-like (PK-like) 682 996 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151059g00047 Stsc-Chr151059 225109 228272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151059g00047 35 1005 Receptor kinase-like Gene Family AT3G47570 42.570 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc151059g00047 Pkinase 9.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151059g00047 - - gmx:100783512 1486.47