Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151059g00045 ATGGTAAATGCGGTTGAACCTCCTAGCAGTCTGCGACACAGAAATGTATCAGCTATGTGGAATCCACTTGAAGCATGTAGGCCTATAATTGATGAAGCTCCTGTGTTTTATCCTACTATTGAGGAATTTGAAGATACTCTTGGCTACATAGCTAAGATACGCCCCCAAGCTGAATCCTATGGCATATGTAGGATTGTACCCCCAGCTTCCTGGGTTCCACCGTGCCCGCTCAAAGAGAAAGATGTGTGGGAAAATGCTACATTTCCCACCCGCATTCAACAAATTGACTTGCTTCAGAATAGGGAGCCAATGACAAAGAAAAGTAAGGGAAGGAAGCGTAAGCGTAGAAAGCAATCGAAAATGGGTTCATGTAGGAGAAGTGTAAAGCCTAGATCAGAAGCTGATGTTACTTCTGAGCCTGAAGAGAAATTTGGATTCCAATCAGGTTCAGATTTCACACTCAAGGATTTTGAGCAATATGATAGATTTTTTAAGGATTCCTACTTTGGCCTGAATGATTCCACCGAAGATCGAAAGATTGGTGATAATGATCAGCAGAAGGGATGGGAGCCCTCTGTGGAGGTTATTGAGGGCGAATATTGGCGGATAGTAGAGAAACCTACAGATGAAGTTGAGGTCTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTCCCAAAGTCATCATCTGTTACTAAGAGCAATTCAGATCAATATGCCGTGTCTGGTTGGAATCTGAATAACTTCCCAAAATTGCCAGGCTCGGCATTATGTTACGAGGGAAGTGATATCTCGGGTGTTCTAGTTCCATGGTTGTATGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGAGCCAAAAGTATGGTACGGTGTACCTGGAAGCCATGCTACAGCTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAGCAACCAAATCTACTTAATGAATTGGTGACTCTCTTTTCTCCTTCAATTCTTAAATCTGAAGGGGTGCCCATATATCGCACTGTCCAGCATTCCGGAGAATTTGTGGTTACTTTTCCAAGGGCGTACCACTCTGGCTTCAACTGTGGTTTCAATTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGTTTTTGCATGGCCAGAATGCTGTTGAGCTTTACAGTATGCAGCGTCGTAAGACATCATTATCACATGACAAGTTGTTATTTGGATCAGCTAAGGAAGCTGTAAGAGCTCTTTCAGATCTAACCCTTCATGGAAAAGAAAATCTCAAAAATTTTAAATGGAAAAGTTTCTGTGGGAAAGATGGAGTTCTGACCAAGGCACTTAAGATGAGGATAGAGATGGAAAAGGAGAGACTTGACCTTCTGGCTCGTTTAAATATGTTTCGGATGGATGATGACTTTGATTTGCACAAGGAAAGAGAGTGCTTTTCTTGTTTCTATGATTTGCATCTATCTGCTGTTGGATGCAAGTGTTCTCCTGACCGTTATTTTTGTCTTAGACACTCAAATCTAATTTGCTCATGTAGAATGGATGAAACATTTGTTCTGTTTCGTTATACTAAAGACGAGCTAATTACATTGGTTGAAGCACTAGAAGGAGACTTACATGCTATAAAAGTGTGGGAAAATGGAAAATATGGAATGGTTTCTGCTAATGCTGAAGATGCTTGCAAAAAGTTGGTCATGGACAACGAAGCTATGGCGGAGCAGGTGCTACCTATGGATTTGAACATTGACCCTATATCTGATGAGAATGATTTGCTGCATATTTCTGATAGCCATGATAATAAAGGTGTTCCACATGTGGGAGAAGTCTGCTATTCAGTGGCCAAAAAGGAACAAGACAATATGCAACTTGGAGCTGGTGGTATCCTATCAGACTTGGACAACAAAGGTTTTTTGCCATGTTCAAGGGATGTTGAAAATTTCTTTCCACTTGATGGCTATAAAGTATTCAGGGTTGGTCTGCAAATGCATTCAGATTCAGGAGAGCTGCTCAACAGTGAATTTAAAGCTGAGGATGTAGACACCTCTGATAAAATTATATCCCTGACAAATCAAAGCTTCTTAATCCAAGGGTTTGGTAATTCTGTTGAGCTTGTAAGTTTAGGCTCAATTATGCAGGGAAAGAAGTGGAGCAATGAATGTGCAATATATCCAAATGGATTCAAGAGTCGCGTTAAGTTCTTTAGCATTCTTGATCCAACAAGACCCTGTTATTATGTTTCTGAAGTCTCTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAACTGAAATTTTCACAAACACATCAGCGGATAAGTGTTGGGAAACAATTCTTGACAGACTAAACCGTGAAATCGAGAGGCGGAAGATTCTAGGTGAACAAGGACTCCCCCCCTTGGAGGTTTTGCAATGCATTAATGGTCATAAAATGTTTGGATTCCTTAAGCCATCCATTATTCAGGCCATTGAAGCTCAAGATCCCAATCATCAATGTGTAGAGTACTGGCATCACAAAGAACTTGCCTCTGAATCTTCAGGTGGTGGAAATGATGCCTCTAAGTGCTCAAATGGTTCAAGCAACTCCGTGGGTGATGTCAAGACCAAACTTTTCGGTTTCGATTTGATAAAGCAAGAGCAAGAAGATAACATAGGAGGGCATTTTCATTCATTTGAAGAGATGAAGTCATTGCTACAAGGATTCCTAAAAAAGGCCAGTCCTGCTGAGTTGAGTGCAATGCTTAAACTATTTAGCTCTGATGAACAAGTTACTCAATGGAGGGCGGCATTCGTAGCATTGATTGAAGAGGTCCAGAAAGGTTGTAGATAA 2895 0.4121 MVNAVEPPSSLRHRNVSAMWNPLEACRPIIDEAPVFYPTIEEFEDTLGYIAKIRPQAESYGICRIVPPASWVPPCPLKEKDVWENATFPTRIQQIDLLQNREPMTKKSKGRKRKRRKQSKMGSCRRSVKPRSEADVTSEPEEKFGFQSGSDFTLKDFEQYDRFFKDSYFGLNDSTEDRKIGDNDQQKGWEPSVEVIEGEYWRIVEKPTDEVEVYYGADLETGALGSGFPKSSSVTKSNSDQYAVSGWNLNNFPKLPGSALCYEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGEPKVWYGVPGSHATALEDAMRKHLPDLFEEQPNLLNELVTLFSPSILKSEGVPIYRTVQHSGEFVVTFPRAYHSGFNCGFNCAEAVNVAPVDWFLHGQNAVELYSMQRRKTSLSHDKLLFGSAKEAVRALSDLTLHGKENLKNFKWKSFCGKDGVLTKALKMRIEMEKERLDLLARLNMFRMDDDFDLHKERECFSCFYDLHLSAVGCKCSPDRYFCLRHSNLICSCRMDETFVLFRYTKDELITLVEALEGDLHAIKVWENGKYGMVSANAEDACKKLVMDNEAMAEQVLPMDLNIDPISDENDLLHISDSHDNKGVPHVGEVCYSVAKKEQDNMQLGAGGILSDLDNKGFLPCSRDVENFFPLDGYKVFRVGLQMHSDSGELLNSEFKAEDVDTSDKIISLTNQSFLIQGFGNSVELVSLGSIMQGKKWSNECAIYPNGFKSRVKFFSILDPTRPCYYVSEVSDAGFLGPLFKVTMEEHPTEIFTNTSADKCWETILDRLNREIERRKILGEQGLPPLEVLQCINGHKMFGFLKPSIIQAIEAQDPNHQCVEYWHHKELASESSGGGNDASKCSNGSSNSVGDVKTKLFGFDLIKQEQEDNIGGHFHSFEEMKSLLQGFLKKASPAELSAMLKLFSSDEQVTQWRAAFVALIEEVQKGCR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151059g00045 964 Gene3D - 715 855 - -
Stsc151059g00045 964 MobiDBLite consensus disorder prediction 126 140 - -
Stsc151059g00045 964 ProSiteProfiles FYR domain FYRN motif profile. 711 769 IPR003888 GO:0005634
Stsc151059g00045 964 Pfam jmjN domain 34 67 IPR003349 -
Stsc151059g00045 964 ProSiteProfiles FYR domain FYRC motif profile. 771 861 IPR003889 GO:0005634
Stsc151059g00045 964 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 576 - -
Stsc151059g00045 964 MobiDBLite consensus disorder prediction 97 142 - -
Stsc151059g00045 964 SMART fyrc_3 775 870 IPR003889 GO:0005634
Stsc151059g00045 964 Pfam JmjC domain, hydroxylase 274 390 IPR003347 -
Stsc151059g00045 964 SMART cupin_9 241 407 IPR003347 -
Stsc151059g00045 964 SMART fyrn_3 725 769 IPR003888 GO:0005634
Stsc151059g00045 964 Pfam F/Y rich C-terminus 773 857 IPR003889 GO:0005634
Stsc151059g00045 964 MobiDBLite consensus disorder prediction 106 124 - -
Stsc151059g00045 964 FunFam Putative lysine-specific demethylase JMJ16 717 855 - -
Stsc151059g00045 964 SUPERFAMILY Clavaminate synthase-like 248 427 - -
Stsc151059g00045 964 ProSiteProfiles JmjC domain profile. 241 407 IPR003347 -
Stsc151059g00045 964 Gene3D Cupin 18 391 - -
Stsc151059g00045 964 SMART JmjN_1 32 73 IPR003349 -
Stsc151059g00045 964 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Stsc151059g00045 964 Pfam C5HC2 zinc finger 496 546 IPR004198 -
Stsc151059g00045 964 Pfam F/Y-rich N-terminus 718 766 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151059g00045 Stsc-Chr151059 208833 212962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151059g00045 41 960 JUMONJI Transcription Factor Family AT4G20400 46.387 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc151059g00045 JmjC 4.8e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151059g00045 K11446 - gmx:100814590 1366.29