LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151059g00013	ATGCTCGGCCAAGACTCTACCGCTACCACCGACCGCTCCGCCGCTCCTCGTCGGATGCCATATTCCCGCTCAGCTTCCTGGACTGATCGCTCTCCGCCCACCTCAAGGCTCCCGCCACTCGCAAACAAGCCGAGATCTCTGCTGCCGCCGCTTCAGCCTCTTGCCATCAACAGGCGGAGCGCGGAGGATTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCACAGACTCCGAGAGGTTCATCATCGGAGAATTCGGTGAAGGAGTTCCAGTTCAAGAGGGACAAGCTAGCTTTCTATGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTATCTTGGGAGTGACACGGTGGCCAAGAACCACGACCTCCTGAGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTTGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAGACTCTCTGGTTGCAGGACAGTCCCACAGAAGACATAACCAGCATCCTCTACGATGTTTTCGATTACTTTGAGGATGTTAGGGAGCAAGGTGGGCGCGTCCTGGTTCACTGCTGCCAAGGGGTTTCCAGATCAACCTCTCTGGTGATCGCGTATCTCATGTGGAGGGAAGGGCAGAGCTTCGAGGATGCGTTTCAGTATGTCAAGAATGCCAGGGGTGTCACCAATCCTAACATGGGTTTTGCTTGTCAGTTATTGCAGTGTCAGAAACGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTCAGGATGTATAGAATGGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTTCCCAAGATTGTGAACCATCCCTCTCCACAAGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTTCCTTCTGCTATTTATGTTTGGACAGGCAAGAATTGCAATTCCGTTATGTCTTCGAATGCAAGAGGCGCTGCATCGCAGGTTGTTCGCTATGAGAGGGCTACGGGCCCTGTTCTTACCATCCATGAGTATGAGGAGCCACCCGAGTTTTGGGTTGCTCTTGCCACTGCTGATTGTGACAAGGGGGAGGATGAGGAGGAGGAGGAGAAGGAAGGAAGCATGGGGATTGATGGTGTTCGTCCTAGGAAGGTTAATGATTATGATTTGGATTATGAGATTTTCCAAAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACTTGCCTTCCAGCCAGAGAAAGCGGCTGGGGGAGACTGCGGCGGAAGCTCGCCAGCGGTTTCATGAAAGGGTTGTTCACTTCATCCAAAAAGAACTCTACGAATGAAGAAGCTTCTCTTGTCATGGAAGAAGCAAAACCAGTTGATCCGAATGAATGCTCAGGCAGTGCAAAAGGTTATGTTGAAGTGATGGATCATTTTGTTCCTATTGTGCAGGTGGATTCATCATCACTCCCAACATCATCAGATTCTCTTCCTTGTTTCCTTAGCAGCAGTTCCAAGTCACCAACACTCTCACCCTCCAGTTCTGATTATGCGAGTTCATTCACATTTTCACCTTCCTCAACAAATTGGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGACTCAACCGAAACTATTCATGCCAAAGATGCTTCTTTATTGGACAATTCCTCTTTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACTTCCGCAGGGTCTAACTTCTTTTTGCCATTGAAAGAGTGCTCACCCTCCATTGCAGTGAGAAGAGGGAGTAATCCACCACCTCGCATGTTGCTTCCTTCTTCGGTCACCGAATCGTCCCATCCTCACCGGAGCAAGATCCATGTAAGATCAAAGTCATTTTCTTTGCCGGAATTGGATGATAGCTTTGTTAAAGAATGTTGA	1914	0.4953	MLGQDSTATTDRSAAPRRMPYSRSASWTDRSPPTSRLPPLANKPRSLLPPLQPLAINRRSAEDWPSAGSDDLGVWPLPQTPRGSSSENSVKEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSPQALDSRGAFIVHVPSAIYVWTGKNCNSVMSSNARGAASQVVRYERATGPVLTIHEYEEPPEFWVALATADCDKGEDEEEEEKEGSMGIDGVRPRKVNDYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFMKGLFTSSKKNSTNEEASLVMEEAKPVDPNECSGSAKGYVEVMDHFVPIVQVDSSSLPTSSDSLPCFLSSSSKSPTLSPSSSDYASSFTFSPSSTNWSSQQPSPSTSSMDSTETIHAKDASLLDNSSLFHKKGDVFLADQTSAGSNFFLPLKECSPSIAVRRGSNPPPRMLLPSSVTESSHPHRSKIHVRSKSFSLPELDDSFVKEC	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151059g00013	637	MobiDBLite	consensus disorder prediction	521	543	-	-
	Stsc151059g00013	637	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	94	247	IPR029021	-
	Stsc151059g00013	637	MobiDBLite	consensus disorder prediction	1	49	-	-
	Stsc151059g00013	637	MobiDBLite	consensus disorder prediction	62	89	-	-
	Stsc151059g00013	637	Gene3D	Protein tyrosine phosphatase superfamily	79	248	IPR029021	-
	Stsc151059g00013	637	ProSitePatterns	Tyrosine specific protein phosphatases active site.	190	200	IPR016130	GO:0016311\|GO:0016791
	Stsc151059g00013	637	Gene3D	Severin	258	354	IPR029006	-
	Stsc151059g00013	637	Pfam	Dual specificity phosphatase, catalytic domain	114	244	IPR000340	GO:0008138\|GO:0016311
	Stsc151059g00013	637	SMART	dsp_5	106	245	IPR020422	GO:0006470\|GO:0008138
	Stsc151059g00013	637	CDD	DSP	107	241	-	-
	Stsc151059g00013	637	SUPERFAMILY	Actin depolymerizing proteins	252	352	-	-
	Stsc151059g00013	637	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	165	226	IPR000387	GO:0016311\|GO:0016791
	Stsc151059g00013	637	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	106	248	IPR020422	GO:0006470\|GO:0008138
	Stsc151059g00013	637	PANTHER	MKPA PROTEIN	17	613	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151059g00013	Stsc-Chr151059	63207	65120	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151059g00013	1	142	Protein tyrosine phosphatase (PTP) family	AT3G55270	38.919	2.67e-31	128

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151059g00013	-		-	lja:Lj6g3v0574850.1	740.339