Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00035 ATGGCGGCTGGTAGACATGGCGGCTATCGTGACAACGAGTTTAGGGACCGTGAGTCGAATTTGGATGTTTCAAGGCGCGGTTTCGCGAATTCGAAGGAAGATTATGACCGGGCTAGGAATGGAGGACGTGATGTTGTGAGGGGTGGCAGCAGGGATGCAAGAGATAAGATTAGGGTTAGGCAGAAGGATATTAGGGAGAGAGATGCTTCCAATGGAAGTCACCGGTCATCTTCTAGTAGGAGTGATTCTGGCAGCAGCGTGGGTGGCGGTAGCGATGGTGGCGGGCTTGGCCCCCGAAGGTGTGGCTTTTCTGCCAAGACCATGGATAGGGAGCCTGGTGAACTTTCCAGTGAGAGTGGGTCTGATGGTGCTATTGAATCAGAGTCAGCGATGAAAGACAGTGAGGTTGCAAATGTTGAACACAATAGGACTCGATCCCCACCCTCACCAGAGAAGAAAAGAAAGTTTTCACCGATTGTGTGGGATCAGGATGACAAGGAAGTGAACGAGCCATCTAAATCCAAATCTAAGGTTTCCACTGCTGCAGTGACCGCTCTACCACCCCCGCCTCCACTGCCAAAATCATTCGAGCGCTCACCCAGTGTTCCATACGGTGGAGTTGAGATACACCCTGTTAAAAAGAGAGAAACTGAGGATGTTGAATTGCGGGAAGAAGCTACTAAGGCCACTTTGCCATCTCCGGGATCACATTACATATCTCCAAAACAGGCTTGGCATAATGGTCGCGAAGCTGAGCAGCCAGAAGGTGAGGAGGATTTTGTTCCTAGTCGAAATATATCATCTTCGAGATGGGCAGCTGTAGATAACTCTCCCGGTGATGAGGGTGAAATCATCGATGATGAGGAATTGCCTAGGAGGAAGAGGAGGCTGTCTCCAGAGTTGTTGGATACAAGACTAAGGGACAAGCTATTGAGCCCAGTGGAATCTAAAAGAGAAGGATTTGATGTTGGCAGGCCTAAATCATCTGAATCCGATGAACGAGGTAGTCATGGGAGAACGTCCAGTGGGGATGATCATCCTGGAACTGCATCAGAGAAGGATGACTACATGGAGATTGATGCTCAAGGTGGAAAAAGTGATACCAGTATCAGTCATTCTGNNNNNNNNNNAGATTCTGAGGATGAAGATGATAGGAGGGAGACTCCAGAACCTCCAGCACCACCGCAAAGAATGGTTAACATGCTTCAAGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACTTATGGTGTTGTATATAGGGCCAGAGATAAGAAGACTGGAGAAATTGTAGCATTGAAGAAAGTCAAGATGGAGAAGGAAAGAGAAGGATTCCCACTGACTTCACTTAGGGAAATAAACATTCTTCTTTCTTTCCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGTCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGTCTAATGGAAGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAATGCTTAATGATCCAGCTTTTAGAAGGTGTTAAGTATCTTCATGATAACTGGGTGCTTCATAGGGATTTAAAAACTTCTAACCTCCTTTTGAATAATAGAGGTGAGCTAAAAATATGTGATTTTGGGTTAGCTCGACAGTATGGGAGTCCATTGAAACCATACACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGTCCAAACAATATTCAACAGCCATTGACATGTGGTCTCTAGGTTGTATAATGGCGGAGCTATTGTCCAAAGAACCACTATTCAATGGGAAAACAGAATTTGATCAGCTTGATAAGATTTTTAAGATTCTTGGCACACCAAACGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTATAACCTCCTGCGCAAAAAGTTTCCTGCCACATCATTCACTGGTTCCCCGGTCCTTTCTGATGCTGGATTTGATTTGCTGA 2061 0.4508 MAAGRHGGYRDNEFRDRESNLDVSRRGFANSKEDYDRARNGGRDVVRGGSRDARDKIRVRQKDIRERDASNGSHRSSSSRSDSGSSVGGGSDGGGLGPRRCGFSAKTMDREPGELSSESGSDGAIESESAMKDSEVANVEHNRTRSPPSPEKKRKFSPIVWDQDDKEVNEPSKSKSKVSTAAVTALPPPPPLPKSFERSPSVPYGGVEIHPVKKRETEDVELREEATKATLPSPGSHYISPKQAWHNGREAEQPEGEEDFVPSRNISSSRWAAVDNSPGDEGEIIDDEELPRRKRRLSPELLDTRLRDKLLSPVESKREGFDVGRPKSSESDERGSHGRTSSGDDHPGTASEKDDYMEIDAQGGKSDTSISHSXXXXDSEDEDDRRETPEPPAPPQRMVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFKILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGSGITSCAKSFLPHHSLVPRSFLMLDLIC 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00035 686 Gene3D Phosphorylase Kinase; domain 1 396 493 - -
Stsc151058g00035 686 ProSiteProfiles Protein kinase domain profile. 411 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151058g00035 686 SUPERFAMILY Protein kinase-like (PK-like) 403 649 IPR011009 -
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 209 226 - -
Stsc151058g00035 686 FunFam Cyclin-dependent kinase G-2 494 681 - -
Stsc151058g00035 686 SMART serkin_6 411 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 286 361 - -
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 8 73 - -
Stsc151058g00035 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 133 173 - -
Stsc151058g00035 686 Pfam Protein kinase domain 411 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 1 398 - -
Stsc151058g00035 686 Gene3D Transferase(Phosphotransferase) domain 1 494 679 - -
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 376 391 - -
Stsc151058g00035 686 PANTHER CELL DIVISION PROTEIN KINASE 409 643 - -
Stsc151058g00035 686 MobiDBLite consensus disorder prediction 74 88 - -
Stsc151058g00035 686 FunFam cyclin-dependent kinase G-2 isoform X1 396 493 - -
Stsc151058g00035 686 CDD STKc_CDC2L1 405 652 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00035 Stsc-Chr151058 190719 194245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00035 402 642 Core Cell Cycle Gene Families AT5G10270 52.344 6.15e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Stsc151058g00035 Pkinase 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00035 K08818 - gmx:100792524 934.095