Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00027 ATGTACTTGTCGGAAAAACCCCGACCCATTGATTTTTATAAGGAAGAAAGCAGCACGCGTGACATGATCATCGAGGTCGTCTCCAACGGCGCTGCGGACCTCCCTCCTCCGCCCTCACACCACCAGCAGCAGATGATCCTTGGTGACAGCAGCGGCGGCGAAGACCCTGAGGTTGAGATCAAGGCGCCAAAGAAGCGCGCCGAGACGTGGGTCCACGAAGAGACTCGAACCCTCATCGCTCTCCGTCGAGAAATGGATGCCCTTTTCAACACTTCCAAGTCCAACAAGCACTTATGGGAGCAGATTTCTTCCAAAATGAGGGATAAGGGTTTCGATCGCTCACCCACCATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACAATGATGGCGGAGGAGGAGGAGGTGGTGGCGGTGGCGGAGGGAGTGGCTCCGCCAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAGGGATAGGAGCAAGTGTGTGCAGTATAAGAGCCCCACTCCTCCACCGCCTCCACCACCCAATCACAAAGTTGAGTCTTTCATGCAATTCACTGATAAAGGTATCGAGGATACCAGCATCTCTTTTGGTCCAGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAGGTTTGGATCATGATGGGCATCCTCTTGCCATTACAACAGCTGAAGCTGTTGCAGCTAGTGGCGTTCCTCCTTGGAATTGGAGAGAAACTCCGGGAAATGGTGAAGAGGGTCAGTCATGTTGTGGAAGGGTTATATCTGTCAAATGGGGTGATTATACGAGAAGAATAGGTATCGACGGTGCTTCAGAAGCCATCAAGGAGGCAATAAGAGCTGCTTTCCGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGATAATCAGAAGTCTCGACCGTGACATGCCATTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTGTGTCTTTATGATGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATCTTCTACACAGAAGACGATTATCGTGATTTTTTGACACGCCGGGGTTGGACATCTCTAAGAGAATTTGATGGTTATAGAAATATCGATAACATGGATGATCTTCGACCGGGTGCCATATACAGGGGTGTGACTTGA 1191 0.4912 MYLSEKPRPIDFYKEESSTRDMIIEVVSNGAADLPPPPSHHQQQMILGDSSGGEDPEVEIKAPKKRAETWVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGGGGGGGGGGGGSGSAKMSYYKEIEEILRDRSKCVQYKSPTPPPPPPPNHKVESFMQFTDKGIEDTSISFGPVEATGRPTLNLERGLDHDGHPLAITTAEAVAASGVPPWNWRETPGNGEEGQSCCGRVISVKWGDYTRRIGIDGASEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRGWTSLREFDGYRNIDNMDDLRPGAIYRGVT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00027 396 MobiDBLite consensus disorder prediction 132 152 - -
Stsc151058g00027 396 Pfam Myb/SANT-like DNA-binding domain 69 162 IPR044822 -
Stsc151058g00027 396 CDD GT1 68 133 - -
Stsc151058g00027 396 FunFam trihelix transcription factor GT-1 70 132 - -
Stsc151058g00027 396 SMART sant 66 128 IPR001005 -
Stsc151058g00027 396 Gene3D - 70 132 - -
Stsc151058g00027 396 PANTHER FI21293P1 46 394 - -
Stsc151058g00027 396 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Stsc151058g00027 396 SUPERFAMILY Homeodomain-like 66 127 IPR009057 -
Stsc151058g00027 396 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00027 Stsc-Chr151058 135329 138767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00027 22 395 Trihelix Transcription Factor Family AT3G25990 69.333 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc151058g00027 Myb_DNA-bind_4 3.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00027 - - ccaj:109807736 668.307