Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00017 ATGTCTGTTGATGGCGAAACAAGCCGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTGAAGCCAGTAAGGATGAAAGAACTGAGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGAAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTTCCTTAGAAGATTGCATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAACAAACACGGCGAAAGAGAATTCGGAGATTCTTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCAGTGGATCTTCATCAGAAGTTTGTTCAAGCAGTGAATCAGATTGGATTTGACAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAGGCAGAGAGATCAGAAGTGCTCCTCAAGCGGAACAAAGCTTTCGGATTCAAATCCGAAAGATCCCGGAAGCTCTACTCTTAAGAACTCTATGAACAAGCAACAAAATGTATTTTCAACTGATTTCAGGGGAACTGTGTCAGAGCCTAACAAAACAGAACAAGAAAGAGCATTAGCTACTAATAATAACATTGTTCCTGATCCAACACATTACACTTGGAATCAAGTTACCCAAAGGAAACTCCAAGATGACCCTAAATCACAATCAATTGCTTCAATGGATTCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGAAAACATTATTCCCGTTCAGTCCAAAAGCCTTGTGGGGAATGATCTGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCAGTCTCATTCCTGATCTGGAATTTTACCAGCAAAACTTACTCTGGGGCGACGAGGCGGGTTTTTCGCCTTTAGAGGAGGACTTGCGTTTCTTTTTGCTACAGAGTGAATGCTATGACGATATGAACTTTGGTATGCACAACATAGAGATGCCACAGTATTATTATGATCCTGGGCTTATTGCTGATGTTCCAAACCATTTATTCTATGATTCAGCGGATTATTCACTAGTAGATCAAAGCCTATTCATAGCATGA 1170 0.4085 MSVDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFSLEDCISSTRKRKDADNKHGEREFGDSSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQRQRDQKCSSSGTKLSDSNPKDPGSSTLKNSMNKQQNVFSTDFRGTVSEPNKTEQERALATNNNIVPDPTHYTWNQVTQRKLQDDPKSQSIASMDSSPSAASSIASSAVENIIPVQSKSLVGNDLGLKTQEFDASLSLIPDLEFYQQNLLWGDEAGFSPLEEDLRFFLLQSECYDDMNFGMHNIEMPQYYYDPGLIADVPNHLFYDSADYSLVDQSLFIA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00017 389 MobiDBLite consensus disorder prediction 175 224 - -
Stsc151058g00017 389 SUPERFAMILY Homeodomain-like 109 168 IPR009057 -
Stsc151058g00017 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 164 IPR006447 GO:0003677
Stsc151058g00017 389 Gene3D - 1 69 - -
Stsc151058g00017 389 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Stsc151058g00017 389 MobiDBLite consensus disorder prediction 248 268 - -
Stsc151058g00017 389 FunFam Two-component response regulator 107 170 - -
Stsc151058g00017 389 Pfam Myb-like DNA-binding domain 113 163 IPR001005 -
Stsc151058g00017 389 SUPERFAMILY CheY-like 2 48 IPR011006 -
Stsc151058g00017 389 Gene3D - 107 170 - -
Stsc151058g00017 389 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 88 262 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00017 Stsc-Chr151058 71966 73323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00017 1 309 Response Regulator Gene Family AT1G67710 46.032 1.69e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151058g00017 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00017 - K14491 gmx:100778324 339.347