Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00016 ATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGCCTACTCCACATACTTATATCCAATGTATACATTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGATAGCTTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCAAGAATCAGAGAACATAGAAGCAGCTGCAGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTATTGATGAAGATCAAGAGGGAGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTTCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGGAGCTTGAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGGGACAGTGATGTAATTGACAGAGCTACACTTGCAATGGATAATATAAGACGTTTCTATCTTTTCATGGAAACTTTGCCACTTAATATCCCTGAAGCACATGTCTATGCATTTAACTACATGCTATGA 627 0.3923 MKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGMPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIREHRSSCSSQIVSRKRLEKFIDEDQEGGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLPLNIPEAHVYAFNYML 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00016 208 ProSiteProfiles Zinc finger RING-type profile. 113 151 IPR001841 -
Stsc151058g00016 208 SMART ring_2 113 150 IPR001841 -
Stsc151058g00016 208 Pfam Zinc finger, C3HC4 type (RING finger) 110 156 - -
Stsc151058g00016 208 SUPERFAMILY RING/U-box 98 156 - -
Stsc151058g00016 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 162 IPR013083 -
Stsc151058g00016 208 PANTHER RING FINGER PROTEIN 41, 151 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00016 Stsc-Chr151058 66514 67701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00016 58 163 RAD5 or RAD16-like Gene Family AT5G05130 30.088 4.48e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00016 - - gmx:100805014 293.508