Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00015 ATGCCATCTATTTCCTCAAAAGAAAGGATAGCTTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCAAGAATCAGAGAACATAGAAGCAGCTGCAGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTATTGATGAAGATCAAGAGGGAGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTTCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGGAGCTTGAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGGGACAGTGATGTAATTGACAGAGCTACACTTGCAATGGATAATATAAGACGTTTCTATCTTTTCATGGAAACTTTGCCACTTAATATCCCTGAAGCACATGTCTATGCATTTAACTACATGCTATGA 492 0.3984 MPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIREHRSSCSSQIVSRKRLEKFIDEDQEGGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLPLNIPEAHVYAFNYML 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00015 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 117 IPR013083 -
Stsc151058g00015 163 PANTHER RING FINGER PROTEIN 41, 151 3 159 - -
Stsc151058g00015 163 Pfam Zinc finger, C3HC4 type (RING finger) 65 111 - -
Stsc151058g00015 163 SUPERFAMILY RING/U-box 53 111 - -
Stsc151058g00015 163 SMART ring_2 68 105 IPR001841 -
Stsc151058g00015 163 ProSiteProfiles Zinc finger RING-type profile. 68 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00015 Stsc-Chr151058 66165 67575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00015 13 118 RAD5 or RAD16-like Gene Family AT5G05130 30.088 3.83e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00015 - - gmx:100805014 222.631