Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00014 ATGGTGCAAATACAACCCAATAGTTCTTTCAGAGAATCTCTCAAGGCTCTCGAAGATGATATTCAACATGCCAACACACTGGCATCAGCACTCCCTAGAGATTATAATGGGAGCTATATCCAAATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGCCTACTCCACATACTTATATCCAATGTATACATTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGATAGCTTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCAAGAATCAGAGAACATAGAAGCAGCTGCAGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTATTGATGAAGATCAAGAGGGAGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTTCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGGAGCTTGAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGGGACAGTGATGTAATTGACAGAGCTACACTTGCAATGGATAATATAAGACGTTTCTATCTTTTCATGGAAACTTTGCCACTTAATATCCCTGAAGCACATGTCTATGCATTTAACTACATGCTATGA 750 0.396 MVQIQPNSSFRESLKALEDDIQHANTLASALPRDYNGSYIQMKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGMPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIREHRSSCSSQIVSRKRLEKFIDEDQEGGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLPLNIPEAHVYAFNYML 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00014 249 SUPERFAMILY RING/U-box 139 197 - -
Stsc151058g00014 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 203 IPR013083 -
Stsc151058g00014 249 Pfam Zinc finger, C3HC4 type (RING finger) 151 197 - -
Stsc151058g00014 249 ProSiteProfiles Zinc finger RING-type profile. 154 192 IPR001841 -
Stsc151058g00014 249 SMART ring_2 154 191 IPR001841 -
Stsc151058g00014 249 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00014 Stsc-Chr151058 66015 67701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00014 145 196 C3H Transcription Factor Family AT5G01960 36.538 8.09e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00014 - - gmx:100805014 352.829