Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00010 ATGGGCCGTCGTAAGATCGAGATTAAGATGGTGAAGGACACCAACACAAGGCAGGTCACATTCTCCAAACGTAGAACCGGACTTTTCAAGAAAGCCAACGAACTTTCTATTCTTTGCGGATCCGAGGTTGCTATTGTCGTTTTCTCTCCAGGGAACAAGCCTTACTCCTTCGCCCACCCCACCGTTGATACTGTTGCCTCCAAGTTTCTCATCCGAAACTCTAATAAGCCTCGTCGTGGAACTGACGACCACGACAAAGACGAGGACGACGGTGATGGCGAAGATGACCGTGGTGCTGATACAACCACCTTGGACCATTTGTATAAGGAGATTGTAGAACAGGTGCACGTAGAGGAGAAAGAGGGCGCAGAGCGTGACAAGGCAATCAAAGAGGTTGTTGAACGGGGAGGGAACAATGAAATTGGGGAATTGAGTGAACTGAAAAAGAGAGTGAGGGAGCGTATTGCTATGTTGGAGACAGTTGAGTCCATGATGCTTCTCTCAGAGGAACCTGTGGATATGAATAGCGTTCTTCCCAAAATCAAGAAGAGAAGGACCAAGTAA 564 0.4787 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGSEVAIVVFSPGNKPYSFAHPTVDTVASKFLIRNSNKPRRGTDDHDKDEDDGDGEDDRGADTTTLDHLYKEIVEQVHVEEKEGAERDKAIKEVVERGGNNEIGELSELKKRVRERIAMLETVESMMLLSEEPVDMNSVLPKIKKRRTK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00010 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151058g00010 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151058g00010 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151058g00010 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Stsc151058g00010 187 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151058g00010 187 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Stsc151058g00010 187 PANTHER MADS BOX PROTEIN 3 153 - -
Stsc151058g00010 187 MobiDBLite consensus disorder prediction 73 103 - -
Stsc151058g00010 187 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Stsc151058g00010 187 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Stsc151058g00010 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00010 Stsc-Chr151058 49459 50216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00010 1 168 Type I MADS-box Gene Family AT2G34440 40.449 1.41e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc151058g00010 SRF-TF 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00010 - - adu:107481967 244.202