Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00006 ATGAAGCTATCTTCAGCTGATTTTAATCCTCCACCACAGGAAGGAGAAAAGCGTGTCTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGTTGTTGGAAGCCGGGTTGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCAACCAACAGGGAAGTGGATGCCCAAATTCCCAACTATCCAAGCTTGCCTCCCCAACTGATTTGTCAACTTCATAATGTGACTATGCATGCTGATATTGAGACAGATGAAGTATACGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAAGCATACCTTCCAGCAGAGTTGGGCTCTCCAAGTAAACAGCCTACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACTCATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCACCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGCGGCCAACCCAAAAGGCATCTATTGACAACGGGATGGAGTGTCTTTGTCAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGCCGTGCTAATCGACCACAACCTGTGATGCCTTCCTCAGTTTTGTCAAGTGATAGCATGCACTTGGGGCTACTTGCTGCTGCAGCTCATGCAGCCGCAACAAATAGTCGATTCACCATTTTTTATAACCCACGTGCTTGCCCATCAGACTTTGTCATACCCTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACAATAACTGGTATTAGTGACTTGGATCCTGTTCGATGGCAAAATTCACATTGGCGCTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCTGGAGAGAAGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTCCCTCTTAGGCTTAAACGACCATGGCCTTCAGGACTACCTTCGTTCTATGGCATGAAGGATGATGATTTTGGCATAAATTCTTCACTAATGTGGCTTAGAGATGCAGATAGAGGGCTGCAGTCTCTTAATTTTCAGGCTACTGGTGTTAGTCCTTGGATGCAGCCGAGGCTTGATCCCTCCATGTTGAATTTGCAAACAGATCTTTATCAAGCTATGGCTGCTGCTGCGCTTCAGGATATGAGGACTTTAGACCCTACTAAACAGCATCCCACTTCCTTACTTCAGTTCCAGCAACCCCAGAACTTCCCTAACCGGACTGGCGCTTTAATGCAGGCGCAAATGTTGCAGCAGTCTCAACATCAGCAGACCTTCCCAAGTAATCAAGAAATTCAGCATCCATCTCAATCTCAATCTCAATCACAGGCTCAAACTCAAACTCATCTTCAGCAGCATCTACAGAATCAGCACTTATTCAACAACCAGGCTCGTCACCAGCAGCAACCACAGCTTCAACAGCAGCAGCAGCAACCACAGCTTCCACAGCAACATCAGCAGCAGCAACCACAACAACGGCAACAGCAGCAGCAACAATTGGTAGATCATCAGCAGATTCCAAGTGCAGTCTCTACAGTGCCTCAGTTCGTTTCGACTCCTCAGTCTCAGTCATTACCCATGCAGGCTATCTCTTCACTATGCCATCAGCAAAGTTTCTCTGATTCAAATGGTACTGCTGCTGTTTCTCCGCTACACAGTATCTTGGGTTCATATCCCCAGGATGAAACATCCCACCTTCTCAACCTTACTAGAACTTCCTCTTGGGTTCCTGTTCAATCTTCATCTGCATGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTCTTTCTTCTGGAGTTTCTCAGTGTGTTCTGCCTCAGGTGGATCAGTTAGGGCAGCCACAGAATACCATGTCTCAAAATGCTATTTCTTTGCCACCATTTCCTGGTAGGGAGTACACTGTAGAAGGGAGCACTGATCCACAAAACCATGTTTTGTTTGGTGTCAATATAGAAAACTCTTCTCTACTAATGCATCATGGAATGTCAAGCCTTAAGGGGGTTGGCAGCAACAGTGACTCATCCACCATACCTATTCAATCTTCTAATTACCTGAATACTGTAGGCACTGATTCTTCATTGAATCAAGGAATGACACACAGCAATGGTGAATCGGGCTTCGTGCAGACTCCAGAAGATGGGGGCCGAGGAAACCCGCCAAATAATAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTTGGAAGATCATTGGATATAACTAAATTTACCAACTACCGTGAGCTGCGCAGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTGGACCGAGAGAATGACGTTCTCCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAGGTGCAGCAAATGGGTAACAATGGCCTTGGCCTTCTGAGCTCTGTCCCAATTCAGAGCCTTTCTAATGGCATCTGTGATGACTTCACAGGCCATGATGACCCAAGAAATTTAGGCACTGTGGGGTCATTAGAGTTCTGA 2757 0.4621 MKLSSADFNPPPQEGEKRVLDSELWHACAGPLVSLPVVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFYGMKDDDFGINSSLMWLRDADRGLQSLNFQATGVSPWMQPRLDPSMLNLQTDLYQAMAAAALQDMRTLDPTKQHPTSLLQFQQPQNFPNRTGALMQAQMLQQSQHQQTFPSNQEIQHPSQSQSQSQAQTQTHLQQHLQNQHLFNNQARHQQQPQLQQQQQQPQLPQQHQQQQPQQRQQQQQQLVDHQQIPSAVSTVPQFVSTPQSQSLPMQAISSLCHQQSFSDSNGTAAVSPLHSILGSYPQDETSHLLNLTRTSSWVPVQSSSAWPSKRVAVDPLLSSGVSQCVLPQVDQLGQPQNTMSQNAISLPPFPGREYTVEGSTDPQNHVLFGVNIENSSLLMHHGMSSLKGVGSNSDSSTIPIQSSNYLNTVGTDSSLNQGMTHSNGESGFVQTPEDGGRGNPPNNKTFVKVYKSGSFGRSLDITKFTNYRELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLGLLSSVPIQSLSNGICDDFTGHDDPRNLGTVGSLEF 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00006 918 SMART B3_2 127 229 IPR003340 GO:0003677
Stsc151058g00006 918 FunFam Auxin response factor 125 229 - -
Stsc151058g00006 918 SUPERFAMILY CAD & PB1 domains 783 864 - -
Stsc151058g00006 918 Gene3D - 291 363 - -
Stsc151058g00006 918 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Stsc151058g00006 918 Gene3D - 786 878 - -
Stsc151058g00006 918 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 878 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc151058g00006 918 Pfam AUX/IAA family 786 874 IPR033389 -
Stsc151058g00006 918 FunFam Auxin response factor 784 878 - -
Stsc151058g00006 918 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc151058g00006 918 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Stsc151058g00006 918 FunFam Auxin response factor 291 363 - -
Stsc151058g00006 918 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Stsc151058g00006 918 Gene3D - 125 228 IPR015300 -
Stsc151058g00006 918 ProSiteProfiles PB1 domain profile. 789 873 IPR000270 GO:0005515
Stsc151058g00006 918 CDD B3_DNA 126 227 IPR003340 GO:0003677
Stsc151058g00006 918 MobiDBLite consensus disorder prediction 481 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00006 Stsc-Chr151058 15882 21427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00006 1 483 B3 DNA Binding Superfamily AT1G30330 84.836 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc151058g00006 AUX_IAA 1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00006 - - gmx:100777789 1484.93