Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151058g00004 ATGAATCAAAACCAGCTTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACTTGTTCATCATCATCATCATCACTTCTAAATCATAATCTGAAAGAAGTTCATTATAGGCAACAAGTGGAAGAAGATGTAACAGTGGCCTTGCACATTGGCCTCCCTGACAATTCCAATAATACCCCCACCAATCATAATATATTTGTGAACCATAATCATCATCATAATGTAGAACAACCTCTCCAAGCTGCAAATAATTACTGGATACCAACTGAAGAACAGATTATAATTGGTTTCAGTCACTTCTCATGTCCTGTTTGCCCTAAAACCTTCAACCGCTATAACAATCTTCAGATGCATCTATGGGGACATGGATCAGAATACAGAAGAGGGCCAGAATCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATACCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCACCCAAGGGCCAAGCCACTAAAAGATTTCAGAACACTTCAAACACACTATAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTGCTAAGAATCTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAAGCTTTTGGCTTTGGTCACACTCCCTTCTCTTCTTCCTCTTCTTTATCTCATTAA 747 0.4137 MNQNQLEPLPLLSSFLGSSTCSSSSSSLLNHNLKEVHYRQQVEEDVTVALHIGLPDNSNNTPTNHNIFVNHNHHHNVEQPLQAANNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHLWGHGSEYRRGPESLKRTHPRPLLEIPCYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCAKNLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHTPFSSSSSLSH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151058g00004 248 Gene3D Classic Zinc Finger 162 235 - -
Stsc151058g00004 248 FunFam Zinc finger protein WIP2 155 237 - -
Stsc151058g00004 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Stsc151058g00004 248 PANTHER ZINC FINGER PROTEIN WIP2 24 241 IPR043584 GO:0003700|GO:0010468
Stsc151058g00004 248 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Stsc151058g00004 248 SUPERFAMILY beta-beta-alpha zinc fingers 97 125 IPR036236 -
Stsc151058g00004 248 Gene3D Classic Zinc Finger 101 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151058g00004 Stsc-Chr151058 3322 4156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151058g00004 1 243 C2H2 Transcription Factor Family AT1G34790 57.769 4.26e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151058g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151058g00004 - - ccaj:109809318 363.999