Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151057g00007 ATGGATCCAATTACTTCATCATCATCACAGGGGCATTCTCTTGCCCCTCCTTTCCGCACAAGAGATCTCAACCTCCACCAATTTTCCAAAACGGAGGCAGATACAGAAACACCGGAAGAACAAGAAATTTCAAGAAGGCCACGAGGCAGACCAGCCGGATCCAAGAACAAGCCCAAACCACCCATCATCATCACGCGCGACAGCGCCAACGCGCTCCGCACCCACGTCATGGAGGTCGCAGACGGCTGCGACATCGTCGAGAGCGTCTCCGACTTCGCGCGAAGGCGCCAGAGGGGCGTCTGCATCATGAGTGGCACCGGCACGGTGGCCAACGTGACGCTCCGCCAACCGGCTTCAAGCAGCGCGGTGGTGACGCTCCAAGGGAGATTCGAGATCTTGTCGCTGGCAGGATCGTTCCTGCCGGCGCCGGCTCCACCGGAAGCGTCACGGCTGACGATATACTTGGCCGGAGGGCAAGGGCAGGTTGTTGGAGGAAGCGTTGCTGGGACGCTGGTGGCTTCGGGGACTGTAGTGATGATGGCTGCTTCGTTCGGTAACGCTGCTTACGAGAAGCTTCCGTTGGAGGAAGATGACGAGAATAATGGTGATGGTGCCACGTTGGCACTTCAACAAGGAGTGTCTTCCCCTGGGGCTAGTAGTAGTGTTCAGCAACATTATTCACAGACACAGCTTTTGAGGGATGTAACTGCGACTCATCATCATGGTGGTTTGGTGATGAATACTAATCCTAATATTAATCTTGTGGGTTCTTCTTCTTCTGTTCATCATCAGATGCCTTCTTCTGATCAATCATTTTGGGCGTCTGGTCGCCCTCCATTCTGA 843 0.5457 MDPITSSSSQGHSLAPPFRTRDLNLHQFSKTEADTETPEEQEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVADGCDIVESVSDFARRRQRGVCIMSGTGTVANVTLRQPASSSAVVTLQGRFEILSLAGSFLPAPAPPEASRLTIYLAGGQGQVVGGSVAGTLVASGTVVMMAASFGNAAYEKLPLEEDDENNGDGATLALQQGVSSPGASSSVQQHYSQTQLLRDVTATHHHGGLVMNTNPNINLVGSSSSVHHQMPSSDQSFWASGRPPF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151057g00007 280 Gene3D - 72 200 - -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 1 15 - -
Stsc151057g00007 280 FunFam AT-hook motif nuclear-localized protein 72 199 - -
Stsc151057g00007 280 CDD DUF296 73 184 IPR005175 -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 195 227 - -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 204 227 - -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 241 280 - -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 1 63 - -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 242 274 - -
Stsc151057g00007 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 198 - -
Stsc151057g00007 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 185 IPR005175 -
Stsc151057g00007 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 274 IPR014476 GO:0003680
Stsc151057g00007 280 ProSiteProfiles PPC domain profile profile. 69 205 IPR005175 -
Stsc151057g00007 280 MobiDBLite consensus disorder prediction 25 49 - -
Stsc151057g00007 280 PIRSF ESCAROLA 5 280 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151057g00007 Stsc-Chr151057 57021 57926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151057g00007 19 199 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 67.857 1.12e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151057g00007 - - gmx:100802044 312.383