Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00039 ATGCCTCTTCTAAGGAGAAAGTCTTTCTCCTTGGTTGATCCACCTAAGGACTTGAAACCAGATGAGCATGTTTATCAGATACGATTTACAAAGGAAATATTTCGAGATTATAATGATTATTTGAACCGTATAAATCTATATCGGCAGAGGATTTGGATGTGTAAAGTCACTGGAAAAACCAACTTGACTTACGAAGAGGCTTTGGTGTCAGAAAAAAGTGGCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGCTTTAAGGATTATTCAGTACAGTATGCTCCCATTGAAGGATCTAGCTGATTTCATTGCTGGAAAATTGGAGGAACGTTTGTTTGTGGGTGCTGAACTGCATGGGAAGAAGAACAATGAATTATACCCCTGCAGAATATTAAAAGTAATCCCGAAAGGAGTTAACAAATTCTGCTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGCAGAAGTCAATGCAGAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGGCTTTTATCCGGGAATCCACATATAGGAATGCGCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATAGAATCTCAACTGACATACCTGAGGAGTTAAGAGGAAGGGTTTTCTTCAAAAATGGACTTTTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCAATGGAAGGAACTGAAAACTGTAAAAGGAACAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGATCAGCAAGAAAATGGTCAGCATAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAATGTTGTACTCCTTGTGGAGTCGCATGCAGCTCTTTTTCGGGTTCTTATAAAAGATGACAGTGAATACACTGAAGCTGTGAAAAAACAAAGGACGAAGTTCAAGATTACAATGGTTAACTGGACAGAATACCTATGTGATTTTCTAGAAATGATCAATATTCCTGGATTGCGGCAATATGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGCTAAATTAGAAATCCTATGTGAATTGGTCAATCAAGTAATTGAAACGACAATTTTCAGAGAGAAGTTGGATGAGATTATTGAACAGCGGCATGTGCTTGGGGCGTCTAGGAGGGAAGAAGCACTGGAAGATGCTAGGAAAAGAAGAGAAGGAAAAGAGATGTTGAAAGCTGAGTTGGAGAGCAATGAAGTGAATGGACATCATGTGAACAGTGAAATCGTCTCATCAAACAGTGATGATGATATACAGAATGGAGACATCAGAAAGAAAAGAAATGGAGAAATAGAATCATCTAGCGACGACAATACAATTGGAAGTTTGATCAAGCATTCAAATCCTGCTTCAAAGAAGATGCCTAAGTCTAAGAAGCCAAATTCAGAGCCGAAAGAACCAACAGAAAATGGAAAAGAATTACCAAAACAATTTAAGAGTGATAAGGATATACCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAACGGCCTATTCGTAGAAGCCCATTAGGTAAGGACAGAAATTACAATAGGTATTGGTGGTTCCGCCGTGATGGGAGGATATTTGTTGAAAGCTCTGACTCGAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTTATGGGTTCACTGAACTGCAAGGGTGAGCGTGAAAGGGCACTGCGAAGTCAACTCGAAAAATACTATAGTAGAGTTTGCTCTGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGATTGCAGCGGACGAATCTGTCCTTCGAAGATCCACTCGAGTTCGAGCCCCTCCCCGGCAAAACCCTGCAAATGCTTTCCTCAATTATGTTAACAAGTGGAAAGTAGATTAG 1989 0.3947 MPLLRRKSFSLVDPPKDLKPDEHVYQIRFTKEIFRDYNDYLNRINLYRQRIWMCKVTGKTNLTYEEALVSEKSGSEKVQQFPKELRASALRIIQYSMLPLKDLADFIAGKLEERLFVGAELHGKKNNELYPCRILKVIPKGVNKFCYEVAWLDKDKNIGEKAEVNAEDLVLKKPLFSRNMLKAFIRESTYRNAPWVLHEEVAKNHRISTDIPEELRGRVFFKNGLLTCSKKRKTEESMEGTENCKRNKLDGAEFDGSTEDQQENGQHKVERIKYPIDDLLVKPSPQDFENAICHKDSNVVLLVESHAALFRVLIKDDSEYTEAVKKQRTKFKITMVNWTEYLCDFLEMINIPGLRQYEATIKRGHYGLVDINAKLEILCELVNQVIETTIFREKLDEIIEQRHVLGASRREEALEDARKRREGKEMLKAELESNEVNGHHVNSEIVSSNSDDDIQNGDIRKKRNGEIESSSDDNTIGSLIKHSNPASKKMPKSKKPNSEPKEPTENGKELPKQFKSDKDIPEKNSKEQRKEYFEREMEKRPIRRSPLGKDRNYNRYWWFRRDGRIFVESSDSKEWGYYSSKEELDAFMGSLNCKGERERALRSQLEKYYSRVCSELQKRSKDLMHRIAADESVLRRSTRVRAPPRQNPANAFLNYVNKWKVD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00039 662 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Stsc151056g00039 662 MobiDBLite consensus disorder prediction 430 533 - -
Stsc151056g00039 662 MobiDBLite consensus disorder prediction 492 533 - -
Stsc151056g00039 662 MobiDBLite consensus disorder prediction 236 268 - -
Stsc151056g00039 662 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Stsc151056g00039 662 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 286 660 - -
Stsc151056g00039 662 MobiDBLite consensus disorder prediction 438 453 - -
Stsc151056g00039 662 MobiDBLite consensus disorder prediction 454 469 - -
Stsc151056g00039 662 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 542 608 IPR028941 -
Stsc151056g00039 662 Coils Coil 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00039 Stsc-Chr151056 211644 216033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00039 516 607 Homeobox Transcription Factor Family AT1G28420 36.634 7.24e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00039 - - gmx:100789956 901.738