Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00038 ATGGGGTCTTCCATAATTCGCAGGAGCATCACCCGCTCCCTCAACCATCCTTCTCTTCTTTCTGCTTCTTCTTGGTGTTTGAGTCACCGCCAACATGCACTTGCTTCCAACCCTCTTTCATCATTTCTTCACACCCAACCCAGCAGTGGTGCAGGACTTCCGTCTTACATGCGAGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATTGAAGAGTTCCACATACCTCGCCCCAAGGCCGGTGAACTCCTCATCAAAACCAAGGCTTGTGGAGTATGCCACTCTGATTTGCATGTTTTGAAAGGTGAACTCCCTTTCTCAAGTCCTTGTGTTTTGGGTCATGAGATCACTGGTGAAGTTGTTCAACATGGACCTCTCTCTGACCACAGAGTTACTGAAAGGCTTCCACTTGGATCTCGAGTTGTTGGCTCCTTCATCATGCCTTGTGGAAACTGCTCCCATTGTTCAAAGGGCCATGATGATCTCTGTGAAGATTTCTTTGCTTATAACCGTGCAAAAGGAACACTATATGATGGTGAAACTCGATTATTTCTTAGAGGCAGTGGAAAACCAGTATATATGTATAGTATGGGAGGGCTTGCAGAGTACTGTGTTGTGCCAGCAAATGCATTATGTGTACTACCGGAAGCATTGCCATATAGCGAGTCTGCAATTCTAGGATGTGCCGTTTTTACTGCTTATGGTGCTATGGCCCATGCAGCTGAGGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGCGTTGGTTCTAGTTGTTTGCAGATAGCTCGAGCATTTGGTGCCTCATATATAATTGCTGTGGATATTCAGGATAAAAAGCTACAGAAAGCAAAGTCATTTGGTGCTACTCATACTATAAATTCAACAAAGGAAGATCCCATCCAAAAGATCATTGAAATTACCGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCATTGGGGAAACCTCAGACATTTTCCCAATGCACACAGAGTGTGAAGGATGGAGGAAAAGCCGTGATGATTGGACTTGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGCTTGTTCGTAGAAAGATACAAATTATAGGGTCGTATGGAGGGAGAGCTAGGCAAGATCTTCCAAAGTTAATGAGATTAGCAGAAACAGGAATATTCAATCTTGAGCATGCTGTTTCTAGAAGATACACCTTTGAGGAGGCAGCCAAAGCATTCCAAGATCTCAACCAAGGAAACATTGTTGGTCGAGCCGTCATCGATATAAACTAG 1287 0.4514 MGSSIIRRSITRSLNHPSLLSASSWCLSHRQHALASNPLSSFLHTQPSSGAGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGELLIKTKACGVCHSDLHVLKGELPFSSPCVLGHEITGEVVQHGPLSDHRVTERLPLGSRVVGSFIMPCGNCSHCSKGHDDLCEDFFAYNRAKGTLYDGETRLFLRGSGKPVYMYSMGGLAEYCVVPANALCVLPEALPYSESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASYIIAVDIQDKKLQKAKSFGATHTINSTKEDPIQKIIEITGGKGVDVAVEALGKPQTFSQCTQSVKDGGKAVMIGLAQAGSVGEMDINRLVRRKIQIIGSYGGRARQDLPKLMRLAETGIFNLEHAVSRRYTFEEAAKAFQDLNQGNIVGRAVIDIN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00038 428 FunFam Alcohol dehydrogenase (Zinc) 61 247 - -
Stsc151056g00038 428 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 219 392 IPR036291 -
Stsc151056g00038 428 SUPERFAMILY GroES-like 52 260 IPR011032 -
Stsc151056g00038 428 FunFam Sorbitol dehydrogenase 234 372 - -
Stsc151056g00038 428 Pfam Alcohol dehydrogenase GroES-like domain 82 213 IPR013154 -
Stsc151056g00038 428 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 56 425 - -
Stsc151056g00038 428 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 114 128 IPR002328 GO:0008270|GO:0016491
Stsc151056g00038 428 CDD Zn_ADH10 57 426 - -
Stsc151056g00038 428 Gene3D - 234 371 - -
Stsc151056g00038 428 Gene3D - 61 417 - -
Stsc151056g00038 428 Pfam Zinc-binding dehydrogenase 257 388 IPR013149 -
Stsc151056g00038 428 SMART PKS_ER_names_mod 64 425 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00038 Stsc-Chr151056 207580 210398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00038 74 427 Monolignol Biosynthesis Gene Families AT4G37990 25.833 3.75e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00038 - - gmx:100802431 697.967