Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00030 ATGTCGAAACCAGCGGCAGCGTCGAAGCCAGCATGGGTGCTCCCACACCGAACCCCAAGGCTAACAGAGCTCTACACGCTCGGAAGAAAACTGGGTCAGGGTCAATTCGGAACCACCTTCCTCTGCACCGAAAAGTCCACGGCTCGCACCTTCGCCTGCAAGTCCATCCCAAAGCGGAAGCTTTTCTGCAAGGAAGACTACGACGACGTTTGGAGAGAGATTCAGATAATGCACCATCTCTCAGAGCACCCCAACGTGGTGAGAATCCATGGCACCTACGAGGACAACCTCGCCGTTCATCTAGTCATGGAGCTCTGTGAAGGCGGTGAGCTCTTTGATAGGATCGTGCACAAGGGTCACTACAGTGAGAGGCAAGCAGCTAAGCTTATCAAGACCATTGTTGAGGTTGTTGAATCTTGCCACTCTCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAATTTCTTGTTCGATAGCGTTGACGAAGATGCTAAGCTCAAAGCCACTGATTTTGGCTTGTCTGTCTTCTATAAGCCTGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTTTATGGACCCGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATCTTATTAAGTGGAGTGCCACCATTTTGGGCTGAAACTGAACCGGGGATCTTCCGACAGATTTTACTAGGAAGAATTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCGGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCTAAAACAAGGCTCACAGCACATGAAGTACTTCGCCATCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCAGTTTTGTCTAGATTGAAGCAATTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCCGAGCGACTTTCTGAGGAAGAAATTGGCGGTCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGCGGAACCATAACATTTGATGAGTTAAAGGAAGGCTTAAAGCGAGTAGGATCCGATCTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCGGATATCGATAAGAGTGGGACAATCGATTATGGTGAATTCATTGCTGCAACTGTGCATTTAAATAAGCTGGAGAGAGAGGAAAACCTTTTGTCAGCATTCTCCTATTTTGACAAAGATGGTAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGATGATGTACATATTGATGACATGATCAAGGAAATAGATCAAGACAACGGGAATGGAGGGATAGGAAGGAGAACCATGAGAAAAACACTCAATTTAAGAGATGCTTTTGGATTAGTAGCCAATCAAGTTATTGATGGTCACCTTTAG 1443 0.4511 MSKPAAASKPAWVLPHRTPRLTELYTLGRKLGQGQFGTTFLCTEKSTARTFACKSIPKRKLFCKEDYDDVWREIQIMHHLSEHPNVVRIHGTYEDNLAVHLVMELCEGGELFDRIVHKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDSVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGRIDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKEGLKRVGSDLMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDDMIKEIDQDNGNGGIGRRTMRKTLNLRDAFGLVANQVIDGHL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00030 480 Gene3D Phosphorylase Kinase; domain 1 27 110 - -
Stsc151056g00030 480 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Stsc151056g00030 480 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 448 - -
Stsc151056g00030 480 ProSitePatterns EF-hand calcium-binding domain. 339 351 IPR018247 -
Stsc151056g00030 480 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509
Stsc151056g00030 480 ProSiteProfiles Protein kinase domain profile. 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151056g00030 480 SMART serkin_6 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151056g00030 480 Pfam EF-hand domain pair 331 391 IPR002048 GO:0005509
Stsc151056g00030 480 FunFam Calcium-dependent protein kinase 1 27 110 - -
Stsc151056g00030 480 SMART efh_1 330 358 IPR002048 GO:0005509
Stsc151056g00030 480 SMART efh_1 402 430 IPR002048 GO:0005509
Stsc151056g00030 480 SMART efh_1 366 394 IPR002048 GO:0005509
Stsc151056g00030 480 SMART efh_1 436 465 IPR002048 GO:0005509
Stsc151056g00030 480 CDD STKc_CAMK 25 282 - -
Stsc151056g00030 480 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Stsc151056g00030 480 SUPERFAMILY EF-hand 322 454 IPR011992 -
Stsc151056g00030 480 SUPERFAMILY Protein kinase-like (PK-like) 11 306 IPR011009 -
Stsc151056g00030 480 FunFam Calcium-dependent protein kinase SK5 111 295 - -
Stsc151056g00030 480 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Stsc151056g00030 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Stsc151056g00030 480 Gene3D - 308 463 - -
Stsc151056g00030 480 Pfam EF-hand domain 403 430 IPR002048 GO:0005509
Stsc151056g00030 480 FunFam Calcium-dependent protein kinase 1 291 460 - -
Stsc151056g00030 480 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151056g00030 480 Gene3D Transferase(Phosphotransferase) domain 1 111 307 - -
Stsc151056g00030 480 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Stsc151056g00030 480 CDD EFh 331 390 IPR002048 GO:0005509
Stsc151056g00030 480 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00030 Stsc-Chr151056 157271 160724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00030 1 470 EF-hand Containing Proteins AT4G09570 75.975 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151056g00030 Pkinase 3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00030 K13412 - gmx:547825 866.3