Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00006 ATGGAGGCAGGTGACGCATTCAAGTGGGACCCGCGCACCATTCTCCCAACTTCTGAGTATGCGGTGCCTGCTGCTGCTGGGGGCCTGGAGGAGCTCTTCCATGCGTACGGGGTCAGGTACTTTACGGCGGCCAAGGTGGCGGAGTTAGGCTTCACGGCCAGGACTCTGGTGGACATGAAAGAGGAGGAGCTGGACCACATGATGAACAGCCTCTCCCAGATCTTCCGTTGGGATCTGCTTGTTGGAGAGCGTTATGGCATCAAAGCTGCAGTCCGAGCTGAGCGTAGAAGAATCCAAGACCATCATCAGCTCCTCATCAGGCGTTATACCTCCAACAACGCCCCCCTTGATGCTCTCTCTCAACAAGAAAACACTTGGGACATGAGGAAGAGGATGAGAAGCAATAACGAGGAGGAGGAAGAGGAAGAAGAAGAGGAGAGACAGAGAGAGCACCCGTTCATAGTGACGGAGCCTGGGGAAGTGGCACGTGGCAAGAAGAACGGCCTGGATTACCTGTTCCATCTGTACGAGCAATGCGGTGAATTCTTGATCCAAGTGCAGAACATTGCGAAGAACGGCGGTCTAAAATGCCCCACCAAGGTGACAAATGAGGTGTTCAGGTACGCCAAGAAGGCAGGGGCTCACTACATAAACAAGCCAAAGATGAGGCACTACGTGCACTGCTACGCGCTTCACTGCCTGGACGAGGACACCTCCAATGAGCTGAGGAGGCAGTTGAAGGAGACAGGCGACAACGTTGGTGCGTGGAGGCACGCCTGCTACAACCCCCTCGTTGCCATTGCTGCTCTTCACCACCACGACATTGACTCCATCTTCAACTCTCATCCTCGCCTTTCCATCTGGTATGTTCCCACCAAGCTTCGCCAGCTTTGTCACGCCCACAGGAACAACACTTGA 918 0.5458 MEAGDAFKWDPRTILPTSEYAVPAAAGGLEELFHAYGVRYFTAAKVAELGFTARTLVDMKEEELDHMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIQDHHQLLIRRYTSNNAPLDALSQQENTWDMRKRMRSNNEEEEEEEEEERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCGEFLIQVQNIAKNGGLKCPTKVTNEVFRYAKKAGAHYINKPKMRHYVHCYALHCLDEDTSNELRRQLKETGDNVGAWRHACYNPLVAIAALHHHDIDSIFNSHPRLSIWYVPTKLRQLCHAHRNNT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00006 305 PANTHER PROTEIN LEAFY 129 304 IPR002910 GO:0003677|GO:0006355
Stsc151056g00006 305 MobiDBLite consensus disorder prediction 125 152 - -
Stsc151056g00006 305 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 144 303 IPR035209 GO:0003677
Stsc151056g00006 305 Coils Coil 128 149 - -
Stsc151056g00006 305 Gene3D Protein LEAFY 136 305 IPR038276 -
Stsc151056g00006 305 Pfam Floricaula / Leafy protein SAM domain 26 102 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00006 Stsc-Chr151056 48718 49786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00006 27 304 Orphan Transcription Factor Family AT5G61850 58.092 5.13e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Stsc151056g00006 C_LFY_FLO 1.8e-96 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00006 - - ahf:112791011 498.434