Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00005 ATGTCGGCGGTGGTATCAGCTCTTGTTCAAGTCATTGGTGGCAATCCACCGCATCATCATCATCAACAACTCTCTCACTCTTCCACTTCTATTGACGATAATCAACACTCTCAACCACCATCGGTATCGCAACATCAAGGAATGGTAAGAAGACATTACAGAGGGGTTAGGCACCGGCCATGGGGAAAATGGGCTGCGGAGATTCGGGATCCGAAGAAGGCGGCAAGGGTTTGGCTTGGAACTTTTGAAAGTGCTGAAGAAGCTGCACTTGCTTATGATGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACACATCAATTTGGTTACCTCACTAACCGTCCTCCTCCTCATGCACAAAATAGTGAACAACTACCTTCTACTACAACTACCACAATTTCTCCTGGCAGTGGTAGTGCTATGACTACTCATTTATACGGGTATGATAAAAATATGTTTGTTTCTTCTTCCTCTTCGTCTTCGTCTTCATCTTCTGGTTTATCTATGCAATTTGGAGTTTCTTCTTCTAAGCCTCCTCCTAGGAATGAATTGGACAAGTCATGA 594 0.4411 MSAVVSALVQVIGGNPPHHHHQQLSHSSTSIDDNQHSQPPSVSQHQGMVRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFESAEEAALAYDEAALRFKGSKAKLNFPERVHLTHQFGYLTNRPPPHAQNSEQLPSTTTTTISPGSGSAMTTHLYGYDKNMFVSSSSSSSSSSSGLSMQFGVSSSKPPPRNELDKS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00005 197 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 MobiDBLite consensus disorder prediction 164 197 - -
Stsc151056g00005 197 MobiDBLite consensus disorder prediction 20 45 - -
Stsc151056g00005 197 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 MobiDBLite consensus disorder prediction 164 187 - -
Stsc151056g00005 197 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Stsc151056g00005 197 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Stsc151056g00005 197 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Stsc151056g00005 197 MobiDBLite consensus disorder prediction 13 50 - -
Stsc151056g00005 197 Gene3D AP2/ERF domain 51 111 IPR036955 GO:0003700|GO:0006355
Stsc151056g00005 197 PANTHER DNA-BINDING DOMAIN 33 171 IPR044808 GO:0003700|GO:0009873
Stsc151056g00005 197 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00005 Stsc-Chr151056 42071 43870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00005 1 155 AP2-EREBP Transcription Factor Family AT5G61890 53.614 2.93e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151056g00005 AP2 7.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00005 - - gmx:100793410 173.711